Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 AC073621.1-201ENST00000392730 636 ntBASIC17.43■□□□□ 0.38
CACNA1AO00555 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CACNA1AO00555 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CACNA1AO00555 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC17.43■□□□□ 0.38
CACNA1AO00555 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC17.43■□□□□ 0.38
CACNA1AO00555 HFE2-206ENST00000634927 506 ntTSL 4 BASIC17.43■□□□□ 0.38
CACNA1AO00555 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CACNA1AO00555 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CACNA1AO00555 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CACNA1AO00555 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC17.43■□□□□ 0.38
CACNA1AO00555 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CACNA1AO00555 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CACNA1AO00555 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CACNA1AO00555 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC17.43■□□□□ 0.38
CACNA1AO00555 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
CACNA1AO00555 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC17.43■□□□□ 0.38
CACNA1AO00555 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC17.43■□□□□ 0.38
CACNA1AO00555 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
CACNA1AO00555 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CACNA1AO00555 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CACNA1AO00555 MOK-225ENST00000522867 1883 ntTSL 5 BASIC17.42■□□□□ 0.38
CACNA1AO00555 FP700111.2-201ENST00000619190 1892 ntBASIC17.42■□□□□ 0.38
CACNA1AO00555 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CACNA1AO00555 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC17.42■□□□□ 0.38
CACNA1AO00555 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC17.42■□□□□ 0.38
CACNA1AO00555 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
CACNA1AO00555 AC051619.7-201ENST00000568314 623 ntBASIC17.42■□□□□ 0.38
CACNA1AO00555 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC17.42■□□□□ 0.38
CACNA1AO00555 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CACNA1AO00555 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
CACNA1AO00555 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CACNA1AO00555 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC17.42■□□□□ 0.38
CACNA1AO00555 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CACNA1AO00555 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC17.42■□□□□ 0.38
CACNA1AO00555 NME2P1-201ENST00000426182 414 ntBASIC17.42■□□□□ 0.38
CACNA1AO00555 DAD1-205ENST00000543337 501 ntTSL 3 BASIC17.42■□□□□ 0.38
CACNA1AO00555 AC011467.2-201ENST00000598425 242 ntBASIC17.42■□□□□ 0.38
CACNA1AO00555 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
CACNA1AO00555 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CACNA1AO00555 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CACNA1AO00555 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CACNA1AO00555 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CACNA1AO00555 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
CACNA1AO00555 AC023141.5-201ENST00000458585 616 ntBASIC17.41■□□□□ 0.38
CACNA1AO00555 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CACNA1AO00555 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CACNA1AO00555 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CACNA1AO00555 AC093520.2-201ENST00000561830 333 ntBASIC17.41■□□□□ 0.38
CACNA1AO00555 AC116407.2-201ENST00000613639 860 ntBASIC17.41■□□□□ 0.38
CACNA1AO00555 LINC00628-201ENST00000628516 1289 ntBASIC17.41■□□□□ 0.38
CACNA1AO00555 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
CACNA1AO00555 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
CACNA1AO00555 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CACNA1AO00555 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CACNA1AO00555 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CACNA1AO00555 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CACNA1AO00555 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CACNA1AO00555 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CACNA1AO00555 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC17.41■□□□□ 0.38
CACNA1AO00555 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CACNA1AO00555 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CACNA1AO00555 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC17.41■□□□□ 0.38
CACNA1AO00555 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CACNA1AO00555 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CACNA1AO00555 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CACNA1AO00555 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CACNA1AO00555 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CACNA1AO00555 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CACNA1AO00555 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC17.4■□□□□ 0.38
CACNA1AO00555 SLBP-205ENST00000488267 987 ntTSL 2 BASIC17.4■□□□□ 0.38
CACNA1AO00555 INGX-202ENST00000489074 768 ntBASIC17.4■□□□□ 0.38
CACNA1AO00555 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CACNA1AO00555 AC004835.2-201ENST00000603762 682 ntBASIC17.4■□□□□ 0.38
CACNA1AO00555 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
CACNA1AO00555 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CACNA1AO00555 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CACNA1AO00555 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CACNA1AO00555 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC17.4■□□□□ 0.38
CACNA1AO00555 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC17.4■□□□□ 0.38
CACNA1AO00555 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
CACNA1AO00555 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC17.4■□□□□ 0.38
CACNA1AO00555 HCG4-201ENST00000418983 998 ntBASIC17.4■□□□□ 0.38
CACNA1AO00555 IGHV3-71-201ENST00000523324 359 ntBASIC17.4■□□□□ 0.38
CACNA1AO00555 NAA60-208ENST00000570819 833 ntTSL 2 BASIC17.4■□□□□ 0.38
CACNA1AO00555 AC006557.2-201ENST00000592985 1240 ntBASIC17.4■□□□□ 0.38
CACNA1AO00555 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC17.4■□□□□ 0.38
CACNA1AO00555 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CACNA1AO00555 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
CACNA1AO00555 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CACNA1AO00555 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
CACNA1AO00555 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CACNA1AO00555 FAM86GP-201ENST00000448322 971 ntBASIC17.39■□□□□ 0.37
CACNA1AO00555 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC17.39■□□□□ 0.37
CACNA1AO00555 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CACNA1AO00555 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.39■□□□□ 0.37
CACNA1AO00555 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CACNA1AO00555 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CACNA1AO00555 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CACNA1AO00555 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CACNA1AO00555 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 64.7 ms