Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
KRT39Q6A163 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
KRT39Q6A163 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
KRT39Q6A163 KRT8P7-201ENST00000533003 1432 ntBASIC20.09■□□□□ 0.81
KRT39Q6A163 HOXB1-202ENST00000577092 1414 ntBASIC20.09■□□□□ 0.81
KRT39Q6A163 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
KRT39Q6A163 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
KRT39Q6A163 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
KRT39Q6A163 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
KRT39Q6A163 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC20.08■□□□□ 0.81
KRT39Q6A163 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
KRT39Q6A163 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
KRT39Q6A163 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
KRT39Q6A163 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
KRT39Q6A163 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
KRT39Q6A163 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
KRT39Q6A163 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
KRT39Q6A163 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC20.08■□□□□ 0.81
KRT39Q6A163 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
KRT39Q6A163 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.81
KRT39Q6A163 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
KRT39Q6A163 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
KRT39Q6A163 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
KRT39Q6A163 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
KRT39Q6A163 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
KRT39Q6A163 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
KRT39Q6A163 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
KRT39Q6A163 GPX4-207ENST00000589115 812 ntTSL 2 BASIC20.08■□□□□ 0.81
KRT39Q6A163 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC20.08■□□□□ 0.81
KRT39Q6A163 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
KRT39Q6A163 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC20.08■□□□□ 0.8
KRT39Q6A163 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.08■□□□□ 0.8
KRT39Q6A163 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
KRT39Q6A163 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.8
KRT39Q6A163 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC20.08■□□□□ 0.8
KRT39Q6A163 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC20.07■□□□□ 0.8
KRT39Q6A163 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC20.07■□□□□ 0.8
KRT39Q6A163 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
KRT39Q6A163 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
KRT39Q6A163 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
KRT39Q6A163 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
KRT39Q6A163 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
KRT39Q6A163 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
KRT39Q6A163 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
KRT39Q6A163 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
KRT39Q6A163 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC20.07■□□□□ 0.8
KRT39Q6A163 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC20.07■□□□□ 0.8
KRT39Q6A163 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC20.07■□□□□ 0.8
KRT39Q6A163 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC20.07■□□□□ 0.8
KRT39Q6A163 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
KRT39Q6A163 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC20.07■□□□□ 0.8
KRT39Q6A163 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
KRT39Q6A163 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
KRT39Q6A163 KRT8P50-201ENST00000562022 1438 ntBASIC20.07■□□□□ 0.8
KRT39Q6A163 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
KRT39Q6A163 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
KRT39Q6A163 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
KRT39Q6A163 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
KRT39Q6A163 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC20.07■□□□□ 0.8
KRT39Q6A163 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
KRT39Q6A163 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC20.07■□□□□ 0.8
KRT39Q6A163 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
KRT39Q6A163 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC20.06■□□□□ 0.8
KRT39Q6A163 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
KRT39Q6A163 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
KRT39Q6A163 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
KRT39Q6A163 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
KRT39Q6A163 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC20.06■□□□□ 0.8
KRT39Q6A163 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC20.06■□□□□ 0.8
KRT39Q6A163 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
KRT39Q6A163 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
KRT39Q6A163 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
KRT39Q6A163 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
KRT39Q6A163 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC20.06■□□□□ 0.8
KRT39Q6A163 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
KRT39Q6A163 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
KRT39Q6A163 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
KRT39Q6A163 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
KRT39Q6A163 KRT18P23-201ENST00000435622 1283 ntBASIC20.06■□□□□ 0.8
KRT39Q6A163 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC20.06■□□□□ 0.8
KRT39Q6A163 DUT-205ENST00000558813 769 ntTSL 2 BASIC20.06■□□□□ 0.8
KRT39Q6A163 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
KRT39Q6A163 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
KRT39Q6A163 AC133561.5-201ENST00000635547 218 ntBASIC20.06■□□□□ 0.8
KRT39Q6A163 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
KRT39Q6A163 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
KRT39Q6A163 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
KRT39Q6A163 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC20.06■□□□□ 0.8
KRT39Q6A163 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
KRT39Q6A163 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
KRT39Q6A163 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
KRT39Q6A163 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
KRT39Q6A163 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
KRT39Q6A163 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
KRT39Q6A163 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
KRT39Q6A163 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
KRT39Q6A163 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
KRT39Q6A163 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
KRT39Q6A163 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
KRT39Q6A163 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms