Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC144BQ3MJ40 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC21.59■■□□□ 1.05
CCDC144BQ3MJ40 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC144BQ3MJ40 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC144BQ3MJ40 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC144BQ3MJ40 AL133373.2-201ENST00000623187 2828 ntBASIC21.59■■□□□ 1.05
CCDC144BQ3MJ40 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC144BQ3MJ40 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC21.59■■□□□ 1.05
CCDC144BQ3MJ40 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC144BQ3MJ40 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC144BQ3MJ40 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC144BQ3MJ40 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC21.59■■□□□ 1.05
CCDC144BQ3MJ40 PTK2-216ENST00000519881 863 ntTSL 3 BASIC21.59■■□□□ 1.05
CCDC144BQ3MJ40 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC144BQ3MJ40 NEK4P2-201ENST00000580004 1012 ntBASIC21.59■■□□□ 1.05
CCDC144BQ3MJ40 AL121894.2-201ENST00000602977 491 ntBASIC21.59■■□□□ 1.05
CCDC144BQ3MJ40 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC144BQ3MJ40 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
CCDC144BQ3MJ40 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC144BQ3MJ40 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC21.59■■□□□ 1.05
CCDC144BQ3MJ40 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC144BQ3MJ40 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC21.59■■□□□ 1.05
CCDC144BQ3MJ40 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC144BQ3MJ40 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC144BQ3MJ40 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC21.59■■□□□ 1.05
CCDC144BQ3MJ40 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
CCDC144BQ3MJ40 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC21.58■■□□□ 1.05
CCDC144BQ3MJ40 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC21.58■■□□□ 1.05
CCDC144BQ3MJ40 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CCDC144BQ3MJ40 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
CCDC144BQ3MJ40 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC21.58■■□□□ 1.05
CCDC144BQ3MJ40 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
CCDC144BQ3MJ40 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC21.58■■□□□ 1.05
CCDC144BQ3MJ40 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CCDC144BQ3MJ40 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC21.58■■□□□ 1.05
CCDC144BQ3MJ40 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC21.58■■□□□ 1.05
CCDC144BQ3MJ40 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CCDC144BQ3MJ40 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CCDC144BQ3MJ40 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CCDC144BQ3MJ40 AC112907.2-201ENST00000448639 330 ntBASIC21.58■■□□□ 1.05
CCDC144BQ3MJ40 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC21.58■■□□□ 1.05
CCDC144BQ3MJ40 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC21.58■■□□□ 1.05
CCDC144BQ3MJ40 VENTXP5-201ENST00000523979 775 ntBASIC21.58■■□□□ 1.05
CCDC144BQ3MJ40 CD81-212ENST00000526072 1172 ntTSL 5 BASIC21.58■■□□□ 1.05
CCDC144BQ3MJ40 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC21.58■■□□□ 1.05
CCDC144BQ3MJ40 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC21.58■■□□□ 1.05
CCDC144BQ3MJ40 GCSHP2-201ENST00000560971 527 ntBASIC21.58■■□□□ 1.05
CCDC144BQ3MJ40 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC21.58■■□□□ 1.05
CCDC144BQ3MJ40 WDR88-203ENST00000592765 651 ntTSL 5 BASIC21.58■■□□□ 1.05
CCDC144BQ3MJ40 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CCDC144BQ3MJ40 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC21.58■■□□□ 1.05
CCDC144BQ3MJ40 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CCDC144BQ3MJ40 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC21.58■■□□□ 1.04
CCDC144BQ3MJ40 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CCDC144BQ3MJ40 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC21.58■■□□□ 1.04
CCDC144BQ3MJ40 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
CCDC144BQ3MJ40 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CCDC144BQ3MJ40 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC21.58■■□□□ 1.04
CCDC144BQ3MJ40 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC21.58■■□□□ 1.04
CCDC144BQ3MJ40 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC21.57■■□□□ 1.04
CCDC144BQ3MJ40 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
CCDC144BQ3MJ40 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC21.57■■□□□ 1.04
CCDC144BQ3MJ40 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC144BQ3MJ40 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC21.57■■□□□ 1.04
CCDC144BQ3MJ40 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC144BQ3MJ40 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC144BQ3MJ40 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC144BQ3MJ40 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
CCDC144BQ3MJ40 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC144BQ3MJ40 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC144BQ3MJ40 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC21.57■■□□□ 1.04
CCDC144BQ3MJ40 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC21.57■■□□□ 1.04
CCDC144BQ3MJ40 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC144BQ3MJ40 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC21.57■■□□□ 1.04
CCDC144BQ3MJ40 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC21.57■■□□□ 1.04
CCDC144BQ3MJ40 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC144BQ3MJ40 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC21.57■■□□□ 1.04
CCDC144BQ3MJ40 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC21.57■■□□□ 1.04
CCDC144BQ3MJ40 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC21.57■■□□□ 1.04
CCDC144BQ3MJ40 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC21.57■■□□□ 1.04
CCDC144BQ3MJ40 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC21.57■■□□□ 1.04
CCDC144BQ3MJ40 AL136038.3-201ENST00000561909 1096 ntBASIC21.57■■□□□ 1.04
CCDC144BQ3MJ40 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC144BQ3MJ40 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC144BQ3MJ40 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC21.57■■□□□ 1.04
CCDC144BQ3MJ40 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC21.57■■□□□ 1.04
CCDC144BQ3MJ40 AL390961.4-201ENST00000623958 2535 ntBASIC21.57■■□□□ 1.04
CCDC144BQ3MJ40 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC144BQ3MJ40 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
CCDC144BQ3MJ40 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC144BQ3MJ40 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC21.56■■□□□ 1.04
CCDC144BQ3MJ40 AC135050.7-201ENST00000624508 2218 ntBASIC21.56■■□□□ 1.04
CCDC144BQ3MJ40 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC144BQ3MJ40 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC21.56■■□□□ 1.04
CCDC144BQ3MJ40 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC144BQ3MJ40 COMP-202ENST00000425807 2292 ntTSL 2 BASIC21.56■■□□□ 1.04
CCDC144BQ3MJ40 BUB3-202ENST00000368859 667 ntTSL 3 BASIC21.56■■□□□ 1.04
CCDC144BQ3MJ40 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC144BQ3MJ40 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC21.56■■□□□ 1.04
CCDC144BQ3MJ40 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC21.56■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms