Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CCNA1P78396 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC21.14■□□□□ 0.98
CCNA1P78396 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CCNA1P78396 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CCNA1P78396 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC21.14■□□□□ 0.98
CCNA1P78396 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCNA1P78396 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCNA1P78396 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
CCNA1P78396 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC21.14■□□□□ 0.97
CCNA1P78396 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCNA1P78396 AKR1C7P-201ENST00000305623 895 ntBASIC21.14■□□□□ 0.97
CCNA1P78396 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCNA1P78396 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC21.14■□□□□ 0.97
CCNA1P78396 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC21.14■□□□□ 0.97
CCNA1P78396 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
CCNA1P78396 POM121L3P-201ENST00000419331 1163 ntBASIC21.14■□□□□ 0.97
CCNA1P78396 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC21.14■□□□□ 0.97
CCNA1P78396 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC21.14■□□□□ 0.97
CCNA1P78396 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CCNA1P78396 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC21.14■□□□□ 0.97
CCNA1P78396 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCNA1P78396 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCNA1P78396 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
CCNA1P78396 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC21.14■□□□□ 0.97
CCNA1P78396 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCNA1P78396 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCNA1P78396 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC21.14■□□□□ 0.97
CCNA1P78396 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
CCNA1P78396 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC21.14■□□□□ 0.97
CCNA1P78396 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCNA1P78396 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC21.13■□□□□ 0.97
CCNA1P78396 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCNA1P78396 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCNA1P78396 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCNA1P78396 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CCNA1P78396 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCNA1P78396 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC21.13■□□□□ 0.97
CCNA1P78396 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCNA1P78396 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC21.13■□□□□ 0.97
CCNA1P78396 AP005901.3-202ENST00000581653 237 ntBASIC21.13■□□□□ 0.97
CCNA1P78396 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCNA1P78396 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCNA1P78396 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC21.13■□□□□ 0.97
CCNA1P78396 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCNA1P78396 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
CCNA1P78396 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC21.13■□□□□ 0.97
CCNA1P78396 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC21.13■□□□□ 0.97
CCNA1P78396 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCNA1P78396 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCNA1P78396 HLA-A-201ENST00000376802 1334 ntBASIC21.12■□□□□ 0.97
CCNA1P78396 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC21.12■□□□□ 0.97
CCNA1P78396 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCNA1P78396 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCNA1P78396 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCNA1P78396 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCNA1P78396 AP000593.1-201ENST00000393668 712 ntBASIC21.12■□□□□ 0.97
CCNA1P78396 LSM5-204ENST00000409909 740 ntTSL 2 BASIC21.12■□□□□ 0.97
CCNA1P78396 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC21.12■□□□□ 0.97
CCNA1P78396 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC21.12■□□□□ 0.97
CCNA1P78396 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC21.12■□□□□ 0.97
CCNA1P78396 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC21.12■□□□□ 0.97
CCNA1P78396 AC004263.2-201ENST00000617183 678 ntBASIC21.12■□□□□ 0.97
CCNA1P78396 BX640515.1-201ENST00000617215 977 ntBASIC21.12■□□□□ 0.97
CCNA1P78396 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC21.12■□□□□ 0.97
CCNA1P78396 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCNA1P78396 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCNA1P78396 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC21.12■□□□□ 0.97
CCNA1P78396 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCNA1P78396 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
CCNA1P78396 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCNA1P78396 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCNA1P78396 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCNA1P78396 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
CCNA1P78396 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
CCNA1P78396 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCNA1P78396 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCNA1P78396 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCNA1P78396 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC21.11■□□□□ 0.97
CCNA1P78396 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
CCNA1P78396 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
CCNA1P78396 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC21.11■□□□□ 0.97
CCNA1P78396 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC21.11■□□□□ 0.97
CCNA1P78396 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
CCNA1P78396 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCNA1P78396 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCNA1P78396 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCNA1P78396 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
CCNA1P78396 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCNA1P78396 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCNA1P78396 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCNA1P78396 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCNA1P78396 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC21.11■□□□□ 0.97
CCNA1P78396 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCNA1P78396 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCNA1P78396 DDT-203ENST00000403754 569 ntTSL 3 BASIC21.11■□□□□ 0.97
CCNA1P78396 DDT-206ENST00000430101 573 ntTSL 2 BASIC21.11■□□□□ 0.97
CCNA1P78396 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CCNA1P78396 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC21.11■□□□□ 0.97
CCNA1P78396 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC21.11■□□□□ 0.97
CCNA1P78396 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms