Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CTCFP49711 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
CTCFP49711 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CTCFP49711 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC21.52■■□□□ 1.04
CTCFP49711 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CTCFP49711 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC21.52■■□□□ 1.04
CTCFP49711 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC21.52■■□□□ 1.04
CTCFP49711 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
CTCFP49711 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
CTCFP49711 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
CTCFP49711 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC21.52■■□□□ 1.04
CTCFP49711 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CTCFP49711 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CTCFP49711 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CTCFP49711 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC21.52■■□□□ 1.04
CTCFP49711 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC21.52■■□□□ 1.04
CTCFP49711 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC21.52■■□□□ 1.04
CTCFP49711 AL035252.4-201ENST00000624174 288 ntBASIC21.52■■□□□ 1.04
CTCFP49711 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC21.52■■□□□ 1.04
CTCFP49711 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC21.52■■□□□ 1.04
CTCFP49711 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC21.52■■□□□ 1.04
CTCFP49711 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CTCFP49711 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
CTCFP49711 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC21.52■■□□□ 1.03
CTCFP49711 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CTCFP49711 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC21.51■■□□□ 1.03
CTCFP49711 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC21.51■■□□□ 1.03
CTCFP49711 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CTCFP49711 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC21.51■■□□□ 1.03
CTCFP49711 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
CTCFP49711 BEX3-201ENST00000361298 921 ntTSL 2 BASIC21.51■■□□□ 1.03
CTCFP49711 GK-202ENST00000378941 458 ntTSL 3 BASIC21.51■■□□□ 1.03
CTCFP49711 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC21.51■■□□□ 1.03
CTCFP49711 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
CTCFP49711 AC005034.1-201ENST00000426657 489 ntBASIC21.51■■□□□ 1.03
CTCFP49711 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
CTCFP49711 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC21.51■■□□□ 1.03
CTCFP49711 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
CTCFP49711 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CTCFP49711 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CTCFP49711 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CTCFP49711 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC21.51■■□□□ 1.03
CTCFP49711 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CTCFP49711 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
CTCFP49711 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CTCFP49711 AC063926.2-201ENST00000623766 1308 ntBASIC21.51■■□□□ 1.03
CTCFP49711 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC21.51■■□□□ 1.03
CTCFP49711 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC21.51■■□□□ 1.03
CTCFP49711 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CTCFP49711 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CTCFP49711 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC21.5■■□□□ 1.03
CTCFP49711 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CTCFP49711 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC21.5■■□□□ 1.03
CTCFP49711 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
CTCFP49711 AC007967.2-201ENST00000432613 625 ntBASIC21.5■■□□□ 1.03
CTCFP49711 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC21.5■■□□□ 1.03
CTCFP49711 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC21.5■■□□□ 1.03
CTCFP49711 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC21.5■■□□□ 1.03
CTCFP49711 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CTCFP49711 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC21.5■■□□□ 1.03
CTCFP49711 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC21.5■■□□□ 1.03
CTCFP49711 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC21.5■■□□□ 1.03
CTCFP49711 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC21.5■■□□□ 1.03
CTCFP49711 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CTCFP49711 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC21.5■■□□□ 1.03
CTCFP49711 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CTCFP49711 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CTCFP49711 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CTCFP49711 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC21.5■■□□□ 1.03
CTCFP49711 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CTCFP49711 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC21.5■■□□□ 1.03
CTCFP49711 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CTCFP49711 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CTCFP49711 LINC01006-201ENST00000333319 2292 ntBASIC21.49■■□□□ 1.03
CTCFP49711 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CTCFP49711 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
CTCFP49711 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CTCFP49711 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CTCFP49711 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
CTCFP49711 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CTCFP49711 RPS2P1-201ENST00000434010 821 ntBASIC21.49■■□□□ 1.03
CTCFP49711 YBX1P5-201ENST00000509441 847 ntBASIC21.49■■□□□ 1.03
CTCFP49711 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC21.49■■□□□ 1.03
CTCFP49711 AC190387.1-201ENST00000551683 408 ntBASIC21.49■■□□□ 1.03
CTCFP49711 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC21.49■■□□□ 1.03
CTCFP49711 AC138761.1-201ENST00000584393 385 ntBASIC21.49■■□□□ 1.03
CTCFP49711 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
CTCFP49711 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC21.49■■□□□ 1.03
CTCFP49711 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CTCFP49711 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC21.49■■□□□ 1.03
CTCFP49711 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CTCFP49711 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
CTCFP49711 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CTCFP49711 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC21.48■■□□□ 1.03
CTCFP49711 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CTCFP49711 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CTCFP49711 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
CTCFP49711 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CTCFP49711 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC21.48■■□□□ 1.03
CTCFP49711 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms