Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC18.5■□□□□ 0.55
CXCL12P48061 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC18.5■□□□□ 0.55
CXCL12P48061 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
CXCL12P48061 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC18.5■□□□□ 0.55
CXCL12P48061 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
CXCL12P48061 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC18.5■□□□□ 0.55
CXCL12P48061 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.5■□□□□ 0.55
CXCL12P48061 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CXCL12P48061 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CXCL12P48061 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CXCL12P48061 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CXCL12P48061 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CXCL12P48061 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CXCL12P48061 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CXCL12P48061 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CXCL12P48061 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CXCL12P48061 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC18.49■□□□□ 0.55
CXCL12P48061 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CXCL12P48061 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CXCL12P48061 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CXCL12P48061 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CXCL12P48061 DDT-203ENST00000403754 569 ntTSL 3 BASIC18.49■□□□□ 0.55
CXCL12P48061 DDT-206ENST00000430101 573 ntTSL 2 BASIC18.49■□□□□ 0.55
CXCL12P48061 SCARNA2-201ENST00000458748 420 ntBASIC18.49■□□□□ 0.55
CXCL12P48061 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CXCL12P48061 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC18.49■□□□□ 0.55
CXCL12P48061 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC18.49■□□□□ 0.55
CXCL12P48061 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC18.49■□□□□ 0.55
CXCL12P48061 AL049840.3-201ENST00000602669 611 ntBASIC18.49■□□□□ 0.55
CXCL12P48061 AL355877.3-201ENST00000622820 899 ntBASIC18.49■□□□□ 0.55
CXCL12P48061 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC18.49■□□□□ 0.55
CXCL12P48061 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CXCL12P48061 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC18.49■□□□□ 0.55
CXCL12P48061 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
CXCL12P48061 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CXCL12P48061 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC18.49■□□□□ 0.55
CXCL12P48061 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CXCL12P48061 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CXCL12P48061 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CXCL12P48061 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CXCL12P48061 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CXCL12P48061 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
CXCL12P48061 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CXCL12P48061 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CXCL12P48061 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.48■□□□□ 0.55
CXCL12P48061 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC18.48■□□□□ 0.55
CXCL12P48061 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
CXCL12P48061 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CXCL12P48061 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC18.48■□□□□ 0.55
CXCL12P48061 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
CXCL12P48061 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CXCL12P48061 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CXCL12P48061 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
CXCL12P48061 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
CXCL12P48061 MIR7706-201ENST00000613747 67 ntBASIC18.48■□□□□ 0.55
CXCL12P48061 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CXCL12P48061 FAM215A-202ENST00000632077 792 ntBASIC18.48■□□□□ 0.55
CXCL12P48061 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CXCL12P48061 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CXCL12P48061 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CXCL12P48061 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC18.48■□□□□ 0.55
CXCL12P48061 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC18.48■□□□□ 0.55
CXCL12P48061 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CXCL12P48061 AC007375.3-201ENST00000600936 2314 ntBASIC18.48■□□□□ 0.55
CXCL12P48061 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CXCL12P48061 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.47■□□□□ 0.55
CXCL12P48061 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CXCL12P48061 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CXCL12P48061 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC18.47■□□□□ 0.55
CXCL12P48061 AC005104.2-201ENST00000427818 678 ntBASIC18.47■□□□□ 0.55
CXCL12P48061 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC18.47■□□□□ 0.55
CXCL12P48061 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC18.47■□□□□ 0.55
CXCL12P48061 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC18.47■□□□□ 0.55
CXCL12P48061 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC18.47■□□□□ 0.55
CXCL12P48061 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC18.47■□□□□ 0.55
CXCL12P48061 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC18.47■□□□□ 0.55
CXCL12P48061 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CXCL12P48061 ANKRD20A8P-203ENST00000641373 517 ntBASIC18.47■□□□□ 0.55
CXCL12P48061 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
CXCL12P48061 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC18.47■□□□□ 0.55
CXCL12P48061 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CXCL12P48061 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.47■□□□□ 0.55
CXCL12P48061 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.46■□□□□ 0.55
CXCL12P48061 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
CXCL12P48061 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CXCL12P48061 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.46■□□□□ 0.55
CXCL12P48061 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CXCL12P48061 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CXCL12P48061 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CXCL12P48061 CCS-201ENST00000310190 942 ntTSL 5 BASIC18.46■□□□□ 0.55
CXCL12P48061 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC18.46■□□□□ 0.55
CXCL12P48061 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CXCL12P48061 RCN1P2-201ENST00000398357 915 ntBASIC18.46■□□□□ 0.55
CXCL12P48061 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC18.46■□□□□ 0.55
CXCL12P48061 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CXCL12P48061 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC18.46■□□□□ 0.55
CXCL12P48061 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC18.46■□□□□ 0.55
CXCL12P48061 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CXCL12P48061 MTDHP3-201ENST00000594186 672 ntBASIC18.46■□□□□ 0.55
CXCL12P48061 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms