Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
CUX1P39880 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
CUX1P39880 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
CUX1P39880 IGHV3-22-201ENST00000520721 359 ntBASIC31.12■■■□□ 2.57
CUX1P39880 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC31.12■■■□□ 2.57
CUX1P39880 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
CUX1P39880 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
CUX1P39880 PIN1-206ENST00000587625 878 ntTSL 2 BASIC31.12■■■□□ 2.57
CUX1P39880 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
CUX1P39880 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
CUX1P39880 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC31.12■■■□□ 2.57
CUX1P39880 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
CUX1P39880 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC31.11■■■□□ 2.57
CUX1P39880 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
CUX1P39880 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC31.11■■■□□ 2.57
CUX1P39880 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
CUX1P39880 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC31.11■■■□□ 2.57
CUX1P39880 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC31.11■■■□□ 2.57
CUX1P39880 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC31.11■■■□□ 2.57
CUX1P39880 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC31.11■■■□□ 2.57
CUX1P39880 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
CUX1P39880 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
CUX1P39880 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC31.11■■■□□ 2.57
CUX1P39880 UROS-202ENST00000368778 1556 ntTSL 2 BASIC31.11■■■□□ 2.57
CUX1P39880 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
CUX1P39880 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
CUX1P39880 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC31.11■■■□□ 2.57
CUX1P39880 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
CUX1P39880 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC31.1■■■□□ 2.57
CUX1P39880 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
CUX1P39880 IRF8-202ENST00000562492 946 ntTSL 3 BASIC31.1■■■□□ 2.57
CUX1P39880 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC31.1■■■□□ 2.57
CUX1P39880 GZMM-202ENST00000592501 941 ntTSL 3 BASIC31.1■■■□□ 2.57
CUX1P39880 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
CUX1P39880 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC31.1■■■□□ 2.57
CUX1P39880 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC31.1■■■□□ 2.57
CUX1P39880 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
CUX1P39880 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC31.1■■■□□ 2.57
CUX1P39880 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC31.1■■■□□ 2.57
CUX1P39880 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC31.09■■■□□ 2.57
CUX1P39880 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
CUX1P39880 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC31.09■■■□□ 2.57
CUX1P39880 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC31.09■■■□□ 2.57
CUX1P39880 RBM17P3-201ENST00000417687 1192 ntBASIC31.09■■■□□ 2.57
CUX1P39880 MEG3-211ENST00000452514 461 ntTSL 3 BASIC31.09■■■□□ 2.57
CUX1P39880 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC31.09■■■□□ 2.57
CUX1P39880 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC31.09■■■□□ 2.57
CUX1P39880 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
CUX1P39880 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC31.09■■■□□ 2.57
CUX1P39880 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC31.09■■■□□ 2.57
CUX1P39880 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
CUX1P39880 RCN1P2-201ENST00000398357 915 ntBASIC31.08■■■□□ 2.57
CUX1P39880 THAP5-204ENST00000438865 868 ntTSL 2 BASIC31.08■■■□□ 2.57
CUX1P39880 SCARNA2-201ENST00000458748 420 ntBASIC31.08■■■□□ 2.57
CUX1P39880 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC31.08■■■□□ 2.57
CUX1P39880 AL138831.2-201ENST00000606564 490 ntBASIC31.08■■■□□ 2.57
CUX1P39880 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
CUX1P39880 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
CUX1P39880 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC31.08■■■□□ 2.57
CUX1P39880 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC31.08■■■□□ 2.57
CUX1P39880 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
CUX1P39880 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
CUX1P39880 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
CUX1P39880 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC31.08■■■□□ 2.57
CUX1P39880 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC31.08■■■□□ 2.57
CUX1P39880 CSF3-203ENST00000394148 622 ntTSL 3 BASIC31.08■■■□□ 2.57
CUX1P39880 FABP5-202ENST00000396359 986 ntTSL 5 BASIC31.08■■■□□ 2.57
CUX1P39880 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC31.08■■■□□ 2.57
CUX1P39880 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
CUX1P39880 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC31.08■■■□□ 2.57
CUX1P39880 PRKN-208ENST00000610470 531 ntTSL 2 BASIC31.08■■■□□ 2.57
CUX1P39880 PRKN-209ENST00000612485 225 ntTSL 5 BASIC31.08■■■□□ 2.57
CUX1P39880 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
CUX1P39880 ANKRD20A8P-203ENST00000641373 517 ntBASIC31.08■■■□□ 2.57
CUX1P39880 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC31.08■■■□□ 2.57
CUX1P39880 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
CUX1P39880 AC112777.1-201ENST00000540175 1423 ntBASIC31.07■■■□□ 2.57
CUX1P39880 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC31.07■■■□□ 2.56
CUX1P39880 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC31.07■■■□□ 2.56
CUX1P39880 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC31.07■■■□□ 2.56
CUX1P39880 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC31.07■■■□□ 2.56
CUX1P39880 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
CUX1P39880 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
CUX1P39880 AC132008.2-207ENST00000454517 770 ntBASIC31.07■■■□□ 2.56
CUX1P39880 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
CUX1P39880 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC31.07■■■□□ 2.56
CUX1P39880 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC31.07■■■□□ 2.56
CUX1P39880 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC31.07■■■□□ 2.56
CUX1P39880 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
CUX1P39880 AL163051.1-201ENST00000569214 1512 ntBASIC31.06■■■□□ 2.56
CUX1P39880 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC31.06■■■□□ 2.56
CUX1P39880 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC31.06■■■□□ 2.56
CUX1P39880 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC31.06■■■□□ 2.56
CUX1P39880 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
CUX1P39880 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC31.06■■■□□ 2.56
CUX1P39880 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
CUX1P39880 MED16-201ENST00000269814 1199 ntTSL 5 BASIC31.06■■■□□ 2.56
CUX1P39880 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC31.06■■■□□ 2.56
CUX1P39880 RPL13AP23-201ENST00000480739 586 ntBASIC31.06■■■□□ 2.56
CUX1P39880 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC31.06■■■□□ 2.56
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms