Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 CD99-202ENST00000381180 530 ntTSL 2 BASIC19.22■□□□□ 0.67
VCANP13611 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VCANP13611 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VCANP13611 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC19.22■□□□□ 0.67
VCANP13611 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VCANP13611 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC19.22■□□□□ 0.67
VCANP13611 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VCANP13611 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
VCANP13611 PBK-203ENST00000522944 1499 ntTSL 2 BASIC19.21■□□□□ 0.67
VCANP13611 PAN3-AS1-201ENST00000563843 1351 ntBASIC19.21■□□□□ 0.67
VCANP13611 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC19.21■□□□□ 0.67
VCANP13611 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
VCANP13611 AC009947.1-201ENST00000444350 727 ntBASIC19.21■□□□□ 0.67
VCANP13611 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC19.21■□□□□ 0.67
VCANP13611 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC19.21■□□□□ 0.67
VCANP13611 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC19.21■□□□□ 0.67
VCANP13611 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
VCANP13611 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VCANP13611 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VCANP13611 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
VCANP13611 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC19.21■□□□□ 0.67
VCANP13611 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC19.21■□□□□ 0.67
VCANP13611 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.21■□□□□ 0.67
VCANP13611 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VCANP13611 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC19.21■□□□□ 0.67
VCANP13611 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VCANP13611 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VCANP13611 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC19.21■□□□□ 0.67
VCANP13611 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC19.21■□□□□ 0.67
VCANP13611 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC19.21■□□□□ 0.67
VCANP13611 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.21■□□□□ 0.67
VCANP13611 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC19.21■□□□□ 0.66
VCANP13611 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
VCANP13611 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
VCANP13611 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VCANP13611 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VCANP13611 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VCANP13611 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
VCANP13611 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VCANP13611 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC19.2■□□□□ 0.66
VCANP13611 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC19.2■□□□□ 0.66
VCANP13611 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
VCANP13611 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
VCANP13611 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
VCANP13611 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
VCANP13611 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC19.2■□□□□ 0.66
VCANP13611 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC19.2■□□□□ 0.66
VCANP13611 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC19.2■□□□□ 0.66
VCANP13611 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC19.2■□□□□ 0.66
VCANP13611 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VCANP13611 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VCANP13611 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC19.2■□□□□ 0.66
VCANP13611 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
VCANP13611 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC19.2■□□□□ 0.66
VCANP13611 FEM1AP4-201ENST00000443167 1987 ntBASIC19.2■□□□□ 0.66
VCANP13611 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VCANP13611 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VCANP13611 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VCANP13611 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VCANP13611 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
VCANP13611 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC19.19■□□□□ 0.66
VCANP13611 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VCANP13611 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VCANP13611 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VCANP13611 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC19.19■□□□□ 0.66
VCANP13611 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC19.19■□□□□ 0.66
VCANP13611 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
VCANP13611 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
VCANP13611 AL023284.2-201ENST00000405850 579 ntBASIC19.19■□□□□ 0.66
VCANP13611 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
VCANP13611 KRT18P2-201ENST00000447938 1258 ntBASIC19.19■□□□□ 0.66
VCANP13611 NOP2-220ENST00000545915 630 ntTSL 2 BASIC19.19■□□□□ 0.66
VCANP13611 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VCANP13611 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VCANP13611 AC008556.1-201ENST00000610908 2040 ntBASIC19.19■□□□□ 0.66
VCANP13611 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
VCANP13611 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VCANP13611 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC19.18■□□□□ 0.66
VCANP13611 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC19.18■□□□□ 0.66
VCANP13611 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC19.18■□□□□ 0.66
VCANP13611 NMU-203ENST00000507338 658 ntTSL 3 BASIC19.18■□□□□ 0.66
VCANP13611 AC011840.4-201ENST00000578471 627 ntBASIC19.18■□□□□ 0.66
VCANP13611 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC19.18■□□□□ 0.66
VCANP13611 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC19.18■□□□□ 0.66
VCANP13611 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VCANP13611 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VCANP13611 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VCANP13611 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VCANP13611 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VCANP13611 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
VCANP13611 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VCANP13611 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VCANP13611 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VCANP13611 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC19.18■□□□□ 0.66
VCANP13611 AL157384.1-201ENST00000445995 2473 ntBASIC19.18■□□□□ 0.66
VCANP13611 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VCANP13611 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC19.18■□□□□ 0.66
VCANP13611 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
VCANP13611 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VCANP13611 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms