Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 DDT-203ENST00000403754 569 ntTSL 3 BASIC18.73■□□□□ 0.59
COL4A2P08572 DDT-206ENST00000430101 573 ntTSL 2 BASIC18.73■□□□□ 0.59
COL4A2P08572 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC18.73■□□□□ 0.59
COL4A2P08572 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A2P08572 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
COL4A2P08572 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC18.73■□□□□ 0.59
COL4A2P08572 AC011840.4-201ENST00000578471 627 ntBASIC18.73■□□□□ 0.59
COL4A2P08572 AL049840.3-201ENST00000602669 611 ntBASIC18.73■□□□□ 0.59
COL4A2P08572 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
COL4A2P08572 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A2P08572 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC18.73■□□□□ 0.59
COL4A2P08572 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A2P08572 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A2P08572 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A2P08572 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A2P08572 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A2P08572 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
COL4A2P08572 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC18.72■□□□□ 0.59
COL4A2P08572 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC18.72■□□□□ 0.59
COL4A2P08572 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC18.72■□□□□ 0.59
COL4A2P08572 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A2P08572 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A2P08572 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC18.72■□□□□ 0.59
COL4A2P08572 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC18.72■□□□□ 0.59
COL4A2P08572 AL138831.2-201ENST00000606564 490 ntBASIC18.72■□□□□ 0.59
COL4A2P08572 ANKRD20A8P-203ENST00000641373 517 ntBASIC18.72■□□□□ 0.59
COL4A2P08572 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A2P08572 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC18.72■□□□□ 0.59
COL4A2P08572 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A2P08572 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
COL4A2P08572 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
COL4A2P08572 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A2P08572 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A2P08572 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.72■□□□□ 0.59
COL4A2P08572 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A2P08572 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A2P08572 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A2P08572 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC18.71■□□□□ 0.59
COL4A2P08572 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
COL4A2P08572 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC18.71■□□□□ 0.59
COL4A2P08572 KRT18P13-201ENST00000400056 1290 ntBASIC18.71■□□□□ 0.59
COL4A2P08572 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC18.71■□□□□ 0.59
COL4A2P08572 MOK-208ENST00000519058 917 ntTSL 2 BASIC18.71■□□□□ 0.59
COL4A2P08572 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC18.71■□□□□ 0.59
COL4A2P08572 GZMM-202ENST00000592501 941 ntTSL 3 BASIC18.71■□□□□ 0.59
COL4A2P08572 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
COL4A2P08572 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
COL4A2P08572 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A2P08572 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A2P08572 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.71■□□□□ 0.59
COL4A2P08572 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
COL4A2P08572 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.71■□□□□ 0.59
COL4A2P08572 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A2P08572 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
COL4A2P08572 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A2P08572 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A2P08572 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A2P08572 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A2P08572 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A2P08572 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC18.71■□□□□ 0.59
COL4A2P08572 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC18.71■□□□□ 0.59
COL4A2P08572 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A2P08572 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC18.71■□□□□ 0.59
COL4A2P08572 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
COL4A2P08572 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC18.71■□□□□ 0.59
COL4A2P08572 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.71■□□□□ 0.59
COL4A2P08572 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A2P08572 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
COL4A2P08572 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
COL4A2P08572 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A2P08572 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A2P08572 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.7■□□□□ 0.58
COL4A2P08572 AL024508.2-201ENST00000607749 1894 ntBASIC18.7■□□□□ 0.58
COL4A2P08572 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A2P08572 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A2P08572 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC18.7■□□□□ 0.58
COL4A2P08572 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC18.7■□□□□ 0.58
COL4A2P08572 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC18.7■□□□□ 0.58
COL4A2P08572 POM121L3P-201ENST00000419331 1163 ntBASIC18.7■□□□□ 0.58
COL4A2P08572 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A2P08572 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC18.7■□□□□ 0.58
COL4A2P08572 AC106730.1-201ENST00000566722 1090 ntBASIC18.7■□□□□ 0.58
COL4A2P08572 AC139887.3-201ENST00000568585 713 ntBASIC18.7■□□□□ 0.58
COL4A2P08572 LITAF-211ENST00000572255 516 ntTSL 4 BASIC18.7■□□□□ 0.58
COL4A2P08572 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
COL4A2P08572 AC117500.6-201ENST00000624871 588 ntBASIC18.7■□□□□ 0.58
COL4A2P08572 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A2P08572 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A2P08572 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A2P08572 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A2P08572 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A2P08572 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.7■□□□□ 0.58
COL4A2P08572 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A2P08572 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A2P08572 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A2P08572 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.69■□□□□ 0.58
COL4A2P08572 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18.69■□□□□ 0.58
COL4A2P08572 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A2P08572 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A2P08572 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms