Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CTDP1Q9Y5B0 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CTDP1Q9Y5B0 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC21.55■■□□□ 1.04
CTDP1Q9Y5B0 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CTDP1Q9Y5B0 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC21.55■■□□□ 1.04
CTDP1Q9Y5B0 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC21.55■■□□□ 1.04
CTDP1Q9Y5B0 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC21.55■■□□□ 1.04
CTDP1Q9Y5B0 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
CTDP1Q9Y5B0 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
CTDP1Q9Y5B0 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CTDP1Q9Y5B0 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CTDP1Q9Y5B0 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
CTDP1Q9Y5B0 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
CTDP1Q9Y5B0 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CTDP1Q9Y5B0 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CTDP1Q9Y5B0 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.54■■□□□ 1.04
CTDP1Q9Y5B0 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC21.54■■□□□ 1.04
CTDP1Q9Y5B0 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
CTDP1Q9Y5B0 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CTDP1Q9Y5B0 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC21.54■■□□□ 1.04
CTDP1Q9Y5B0 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CTDP1Q9Y5B0 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
CTDP1Q9Y5B0 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CTDP1Q9Y5B0 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC21.54■■□□□ 1.04
CTDP1Q9Y5B0 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CTDP1Q9Y5B0 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC21.54■■□□□ 1.04
CTDP1Q9Y5B0 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC21.54■■□□□ 1.04
CTDP1Q9Y5B0 AC011498.5-201ENST00000592027 486 ntBASIC21.54■■□□□ 1.04
CTDP1Q9Y5B0 AL121672.3-201ENST00000608644 468 ntBASIC21.54■■□□□ 1.04
CTDP1Q9Y5B0 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC21.54■■□□□ 1.04
CTDP1Q9Y5B0 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CTDP1Q9Y5B0 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CTDP1Q9Y5B0 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
CTDP1Q9Y5B0 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CTDP1Q9Y5B0 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
CTDP1Q9Y5B0 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CTDP1Q9Y5B0 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC21.53■■□□□ 1.04
CTDP1Q9Y5B0 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
CTDP1Q9Y5B0 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CTDP1Q9Y5B0 POLI-202ENST00000406285 2030 ntTSL 2 BASIC21.53■■□□□ 1.04
CTDP1Q9Y5B0 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC21.53■■□□□ 1.04
CTDP1Q9Y5B0 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CTDP1Q9Y5B0 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC21.53■■□□□ 1.04
CTDP1Q9Y5B0 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC21.53■■□□□ 1.04
CTDP1Q9Y5B0 NAA38-203ENST00000575071 553 ntTSL 2 BASIC21.53■■□□□ 1.04
CTDP1Q9Y5B0 AC010240.3-201ENST00000607688 395 ntBASIC21.53■■□□□ 1.04
CTDP1Q9Y5B0 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC21.53■■□□□ 1.04
CTDP1Q9Y5B0 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CTDP1Q9Y5B0 AC034236.2-201ENST00000606662 1610 ntBASIC21.53■■□□□ 1.04
CTDP1Q9Y5B0 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC21.53■■□□□ 1.04
CTDP1Q9Y5B0 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CTDP1Q9Y5B0 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CTDP1Q9Y5B0 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CTDP1Q9Y5B0 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CTDP1Q9Y5B0 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CTDP1Q9Y5B0 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CTDP1Q9Y5B0 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CTDP1Q9Y5B0 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC21.52■■□□□ 1.04
CTDP1Q9Y5B0 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CTDP1Q9Y5B0 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC21.52■■□□□ 1.04
CTDP1Q9Y5B0 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
CTDP1Q9Y5B0 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC21.52■■□□□ 1.04
CTDP1Q9Y5B0 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
CTDP1Q9Y5B0 AL391807.1-203ENST00000604392 2365 ntBASIC21.52■■□□□ 1.04
CTDP1Q9Y5B0 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
CTDP1Q9Y5B0 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CTDP1Q9Y5B0 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC21.52■■□□□ 1.04
CTDP1Q9Y5B0 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
CTDP1Q9Y5B0 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CTDP1Q9Y5B0 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
CTDP1Q9Y5B0 CNP-204ENST00000472031 1019 ntTSL 2 BASIC21.52■■□□□ 1.04
CTDP1Q9Y5B0 PP7080-204ENST00000510714 601 ntTSL 3 BASIC21.52■■□□□ 1.04
CTDP1Q9Y5B0 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC21.52■■□□□ 1.04
CTDP1Q9Y5B0 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC21.52■■□□□ 1.04
CTDP1Q9Y5B0 AC104390.1-201ENST00000555663 520 ntBASIC21.52■■□□□ 1.04
CTDP1Q9Y5B0 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC21.52■■□□□ 1.04
CTDP1Q9Y5B0 AC079602.3-201ENST00000623931 403 ntBASIC21.52■■□□□ 1.04
CTDP1Q9Y5B0 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CTDP1Q9Y5B0 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC21.52■■□□□ 1.04
CTDP1Q9Y5B0 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
CTDP1Q9Y5B0 HOXB1-202ENST00000577092 1414 ntBASIC21.52■■□□□ 1.04
CTDP1Q9Y5B0 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
CTDP1Q9Y5B0 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC21.52■■□□□ 1.04
CTDP1Q9Y5B0 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC21.52■■□□□ 1.04
CTDP1Q9Y5B0 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
CTDP1Q9Y5B0 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC21.52■■□□□ 1.04
CTDP1Q9Y5B0 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CTDP1Q9Y5B0 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.03
CTDP1Q9Y5B0 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.03
CTDP1Q9Y5B0 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
CTDP1Q9Y5B0 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CTDP1Q9Y5B0 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CTDP1Q9Y5B0 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CTDP1Q9Y5B0 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CTDP1Q9Y5B0 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CTDP1Q9Y5B0 ATP5G2P1-201ENST00000433580 426 ntBASIC21.51■■□□□ 1.03
CTDP1Q9Y5B0 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CTDP1Q9Y5B0 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CTDP1Q9Y5B0 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC21.51■■□□□ 1.03
CTDP1Q9Y5B0 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC21.51■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms