Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TM9SF3Q9HD45 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TM9SF3Q9HD45 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TM9SF3Q9HD45 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
TM9SF3Q9HD45 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.63■□□□□ 0.57
TM9SF3Q9HD45 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TM9SF3Q9HD45 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TM9SF3Q9HD45 TSSC2-201ENST00000450217 709 ntBASIC18.63■□□□□ 0.57
TM9SF3Q9HD45 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC18.63■□□□□ 0.57
TM9SF3Q9HD45 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
TM9SF3Q9HD45 SEC1P-202ENST00000473944 940 ntBASIC18.63■□□□□ 0.57
TM9SF3Q9HD45 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC18.63■□□□□ 0.57
TM9SF3Q9HD45 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC18.63■□□□□ 0.57
TM9SF3Q9HD45 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC18.63■□□□□ 0.57
TM9SF3Q9HD45 AC092329.2-201ENST00000598402 547 ntBASIC18.63■□□□□ 0.57
TM9SF3Q9HD45 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TM9SF3Q9HD45 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.63■□□□□ 0.57
TM9SF3Q9HD45 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
TM9SF3Q9HD45 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.63■□□□□ 0.57
TM9SF3Q9HD45 KRT8P3-201ENST00000519669 1449 ntBASIC18.63■□□□□ 0.57
TM9SF3Q9HD45 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.63■□□□□ 0.57
TM9SF3Q9HD45 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
TM9SF3Q9HD45 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
TM9SF3Q9HD45 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TM9SF3Q9HD45 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TM9SF3Q9HD45 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TM9SF3Q9HD45 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC18.63■□□□□ 0.57
TM9SF3Q9HD45 AC004408.2-201ENST00000623613 2777 ntBASIC18.63■□□□□ 0.57
TM9SF3Q9HD45 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.63■□□□□ 0.57
TM9SF3Q9HD45 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
TM9SF3Q9HD45 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TM9SF3Q9HD45 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TM9SF3Q9HD45 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TM9SF3Q9HD45 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
TM9SF3Q9HD45 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TM9SF3Q9HD45 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TM9SF3Q9HD45 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TM9SF3Q9HD45 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TM9SF3Q9HD45 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TM9SF3Q9HD45 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC18.62■□□□□ 0.57
TM9SF3Q9HD45 BX276092.5-203ENST00000456199 560 ntBASIC18.62■□□□□ 0.57
TM9SF3Q9HD45 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC18.62■□□□□ 0.57
TM9SF3Q9HD45 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC18.62■□□□□ 0.57
TM9SF3Q9HD45 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC18.62■□□□□ 0.57
TM9SF3Q9HD45 MIR3652-201ENST00000579335 131 ntBASIC18.62■□□□□ 0.57
TM9SF3Q9HD45 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TM9SF3Q9HD45 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC18.62■□□□□ 0.57
TM9SF3Q9HD45 AL121672.3-201ENST00000608644 468 ntBASIC18.62■□□□□ 0.57
TM9SF3Q9HD45 IRF5-214ENST00000613821 595 ntTSL 5 BASIC18.62■□□□□ 0.57
TM9SF3Q9HD45 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TM9SF3Q9HD45 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
TM9SF3Q9HD45 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC18.62■□□□□ 0.57
TM9SF3Q9HD45 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.62■□□□□ 0.57
TM9SF3Q9HD45 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TM9SF3Q9HD45 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC18.62■□□□□ 0.57
TM9SF3Q9HD45 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
TM9SF3Q9HD45 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TM9SF3Q9HD45 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TM9SF3Q9HD45 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.62■□□□□ 0.57
TM9SF3Q9HD45 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TM9SF3Q9HD45 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TM9SF3Q9HD45 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
TM9SF3Q9HD45 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
TM9SF3Q9HD45 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.61■□□□□ 0.57
TM9SF3Q9HD45 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
TM9SF3Q9HD45 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TM9SF3Q9HD45 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TM9SF3Q9HD45 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.61■□□□□ 0.57
TM9SF3Q9HD45 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TM9SF3Q9HD45 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TM9SF3Q9HD45 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
TM9SF3Q9HD45 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
TM9SF3Q9HD45 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.61■□□□□ 0.57
TM9SF3Q9HD45 AC016734.2-201ENST00000624325 1377 ntBASIC18.61■□□□□ 0.57
TM9SF3Q9HD45 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TM9SF3Q9HD45 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TM9SF3Q9HD45 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TM9SF3Q9HD45 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
TM9SF3Q9HD45 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TM9SF3Q9HD45 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC18.61■□□□□ 0.57
TM9SF3Q9HD45 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TM9SF3Q9HD45 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TM9SF3Q9HD45 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
TM9SF3Q9HD45 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TM9SF3Q9HD45 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TM9SF3Q9HD45 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TM9SF3Q9HD45 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TM9SF3Q9HD45 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TM9SF3Q9HD45 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TM9SF3Q9HD45 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
TM9SF3Q9HD45 PRR29-207ENST00000580752 458 ntTSL 3 BASIC18.61■□□□□ 0.57
TM9SF3Q9HD45 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC18.61■□□□□ 0.57
TM9SF3Q9HD45 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TM9SF3Q9HD45 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC18.61■□□□□ 0.57
TM9SF3Q9HD45 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC18.61■□□□□ 0.57
TM9SF3Q9HD45 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
TM9SF3Q9HD45 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
TM9SF3Q9HD45 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.6■□□□□ 0.57
TM9SF3Q9HD45 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TM9SF3Q9HD45 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms