Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
HMGB4Q8WW32 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB4Q8WW32 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.68■□□□□ 0.58
HMGB4Q8WW32 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB4Q8WW32 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB4Q8WW32 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB4Q8WW32 IRX1P1-201ENST00000438849 1838 ntBASIC18.68■□□□□ 0.58
HMGB4Q8WW32 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
HMGB4Q8WW32 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB4Q8WW32 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB4Q8WW32 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
HMGB4Q8WW32 PVRIG2P-201ENST00000435460 978 ntBASIC18.68■□□□□ 0.58
HMGB4Q8WW32 AC009078.2-202ENST00000463353 338 ntBASIC18.68■□□□□ 0.58
HMGB4Q8WW32 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB4Q8WW32 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB4Q8WW32 AC138894.3-201ENST00000603787 634 ntBASIC18.68■□□□□ 0.58
HMGB4Q8WW32 AL031008.1-201ENST00000619963 541 ntBASIC18.68■□□□□ 0.58
HMGB4Q8WW32 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18.68■□□□□ 0.58
HMGB4Q8WW32 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
HMGB4Q8WW32 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC18.68■□□□□ 0.58
HMGB4Q8WW32 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB4Q8WW32 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB4Q8WW32 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB4Q8WW32 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.68■□□□□ 0.58
HMGB4Q8WW32 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HMGB4Q8WW32 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.68■□□□□ 0.58
HMGB4Q8WW32 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.67■□□□□ 0.58
HMGB4Q8WW32 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
HMGB4Q8WW32 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB4Q8WW32 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB4Q8WW32 LINC00167-201ENST00000530583 1419 ntBASIC18.67■□□□□ 0.58
HMGB4Q8WW32 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.67■□□□□ 0.58
HMGB4Q8WW32 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
HMGB4Q8WW32 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB4Q8WW32 AC125437.2-201ENST00000625180 2167 ntBASIC18.67■□□□□ 0.58
HMGB4Q8WW32 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB4Q8WW32 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
HMGB4Q8WW32 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC18.67■□□□□ 0.58
HMGB4Q8WW32 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC18.67■□□□□ 0.58
HMGB4Q8WW32 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC18.67■□□□□ 0.58
HMGB4Q8WW32 KRT18P31-201ENST00000506277 1292 ntBASIC18.67■□□□□ 0.58
HMGB4Q8WW32 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB4Q8WW32 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB4Q8WW32 AC074051.2-201ENST00000565115 352 ntBASIC18.67■□□□□ 0.58
HMGB4Q8WW32 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC18.67■□□□□ 0.58
HMGB4Q8WW32 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC18.67■□□□□ 0.58
HMGB4Q8WW32 AL390719.2-201ENST00000606993 987 ntBASIC18.67■□□□□ 0.58
HMGB4Q8WW32 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.67■□□□□ 0.58
HMGB4Q8WW32 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB4Q8WW32 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.67■□□□□ 0.58
HMGB4Q8WW32 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB4Q8WW32 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB4Q8WW32 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HMGB4Q8WW32 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.67■□□□□ 0.58
HMGB4Q8WW32 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC18.67■□□□□ 0.58
HMGB4Q8WW32 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGB4Q8WW32 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGB4Q8WW32 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC18.66■□□□□ 0.58
HMGB4Q8WW32 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
HMGB4Q8WW32 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC18.66■□□□□ 0.58
HMGB4Q8WW32 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HMGB4Q8WW32 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.66■□□□□ 0.58
HMGB4Q8WW32 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGB4Q8WW32 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGB4Q8WW32 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC18.66■□□□□ 0.58
HMGB4Q8WW32 AP000347.1-202ENST00000435868 847 ntBASIC18.66■□□□□ 0.58
HMGB4Q8WW32 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
HMGB4Q8WW32 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGB4Q8WW32 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.66■□□□□ 0.58
HMGB4Q8WW32 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 AC079781.3-201ENST00000449110 356 ntBASIC18.65■□□□□ 0.58
HMGB4Q8WW32 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 GPR32P1-201ENST00000601788 811 ntBASIC18.65■□□□□ 0.58
HMGB4Q8WW32 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms