Protein–RNA interactions for Protein: Q8TER0

SNED1, Sushi, nidogen and EGF-like domain-containing protein 1, humanhuman

Predictions only

Length 1,413 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNED1Q8TER0 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
SNED1Q8TER0 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC22.67■■□□□ 1.22
SNED1Q8TER0 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC22.67■■□□□ 1.22
SNED1Q8TER0 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SNED1Q8TER0 FAM197Y8-203ENST00000450145 560 ntBASIC22.67■■□□□ 1.22
SNED1Q8TER0 VENTXP7-201ENST00000475503 772 ntBASIC22.67■■□□□ 1.22
SNED1Q8TER0 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC22.67■■□□□ 1.22
SNED1Q8TER0 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC22.67■■□□□ 1.22
SNED1Q8TER0 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC22.67■■□□□ 1.22
SNED1Q8TER0 AC106730.1-201ENST00000566722 1090 ntBASIC22.67■■□□□ 1.22
SNED1Q8TER0 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC22.67■■□□□ 1.22
SNED1Q8TER0 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC22.67■■□□□ 1.22
SNED1Q8TER0 AL049840.3-201ENST00000602669 611 ntBASIC22.67■■□□□ 1.22
SNED1Q8TER0 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SNED1Q8TER0 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SNED1Q8TER0 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC22.67■■□□□ 1.22
SNED1Q8TER0 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SNED1Q8TER0 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC22.67■■□□□ 1.22
SNED1Q8TER0 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
SNED1Q8TER0 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
SNED1Q8TER0 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SNED1Q8TER0 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
SNED1Q8TER0 KRT18P58-201ENST00000527480 1120 ntBASIC22.66■■□□□ 1.22
SNED1Q8TER0 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC22.66■■□□□ 1.22
SNED1Q8TER0 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC22.66■■□□□ 1.22
SNED1Q8TER0 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SNED1Q8TER0 RPL18-209ENST00000550645 463 ntTSL 5 BASIC22.66■■□□□ 1.22
SNED1Q8TER0 RPL18-214ENST00000552588 559 ntTSL 3 BASIC22.66■■□□□ 1.22
SNED1Q8TER0 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC22.66■■□□□ 1.22
SNED1Q8TER0 AC064862.7-201ENST00000604520 867 ntBASIC22.66■■□□□ 1.22
SNED1Q8TER0 AC114341.1-201ENST00000618070 349 ntBASIC22.66■■□□□ 1.22
SNED1Q8TER0 ABBA01031661.1-201ENST00000634362 1253 ntBASIC22.66■■□□□ 1.22
SNED1Q8TER0 AC068587.9-201ENST00000641814 219 ntBASIC22.66■■□□□ 1.22
SNED1Q8TER0 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SNED1Q8TER0 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SNED1Q8TER0 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SNED1Q8TER0 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC22.66■■□□□ 1.22
SNED1Q8TER0 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
SNED1Q8TER0 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC22.66■■□□□ 1.22
SNED1Q8TER0 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC22.66■■□□□ 1.22
SNED1Q8TER0 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SNED1Q8TER0 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
SNED1Q8TER0 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC22.66■■□□□ 1.22
SNED1Q8TER0 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC22.66■■□□□ 1.22
SNED1Q8TER0 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC22.66■■□□□ 1.22
SNED1Q8TER0 HES2-202ENST00000377836 507 ntTSL 2 BASIC22.65■■□□□ 1.22
SNED1Q8TER0 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC22.65■■□□□ 1.22
SNED1Q8TER0 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SNED1Q8TER0 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
SNED1Q8TER0 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
SNED1Q8TER0 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SNED1Q8TER0 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC22.65■■□□□ 1.22
SNED1Q8TER0 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
SNED1Q8TER0 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
SNED1Q8TER0 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC22.65■■□□□ 1.22
SNED1Q8TER0 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
SNED1Q8TER0 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
SNED1Q8TER0 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
SNED1Q8TER0 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SNED1Q8TER0 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC22.65■■□□□ 1.22
SNED1Q8TER0 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
SNED1Q8TER0 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC22.65■■□□□ 1.22
SNED1Q8TER0 POM121L3P-201ENST00000419331 1163 ntBASIC22.65■■□□□ 1.22
SNED1Q8TER0 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC22.65■■□□□ 1.22
SNED1Q8TER0 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC22.65■■□□□ 1.22
SNED1Q8TER0 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC22.65■■□□□ 1.22
SNED1Q8TER0 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
SNED1Q8TER0 AC005336.2-201ENST00000593183 939 ntBASIC22.65■■□□□ 1.22
SNED1Q8TER0 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
SNED1Q8TER0 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SNED1Q8TER0 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC22.64■■□□□ 1.22
SNED1Q8TER0 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC22.64■■□□□ 1.22
SNED1Q8TER0 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
SNED1Q8TER0 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.22
SNED1Q8TER0 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
SNED1Q8TER0 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC22.64■■□□□ 1.22
SNED1Q8TER0 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC22.64■■□□□ 1.22
SNED1Q8TER0 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
SNED1Q8TER0 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
SNED1Q8TER0 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
SNED1Q8TER0 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
SNED1Q8TER0 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
SNED1Q8TER0 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
SNED1Q8TER0 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC22.64■■□□□ 1.21
SNED1Q8TER0 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
SNED1Q8TER0 RNPS1P1-201ENST00000507437 918 ntBASIC22.64■■□□□ 1.21
SNED1Q8TER0 AC009065.1-201ENST00000564055 1225 ntBASIC22.64■■□□□ 1.21
SNED1Q8TER0 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC22.64■■□□□ 1.21
SNED1Q8TER0 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC22.64■■□□□ 1.21
SNED1Q8TER0 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.21
SNED1Q8TER0 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
SNED1Q8TER0 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC22.63■■□□□ 1.21
SNED1Q8TER0 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
SNED1Q8TER0 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
SNED1Q8TER0 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
SNED1Q8TER0 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
SNED1Q8TER0 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
SNED1Q8TER0 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC22.63■■□□□ 1.21
SNED1Q8TER0 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC22.63■■□□□ 1.21
SNED1Q8TER0 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC22.63■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms