Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLIP4Q8N3C7 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLIP4Q8N3C7 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
CLIP4Q8N3C7 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.48■□□□□ 0.39
CLIP4Q8N3C7 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.47■□□□□ 0.39
CLIP4Q8N3C7 HTR7P1-201ENST00000538670 1336 ntBASIC17.47■□□□□ 0.39
CLIP4Q8N3C7 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC17.47■□□□□ 0.39
CLIP4Q8N3C7 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
CLIP4Q8N3C7 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC17.47■□□□□ 0.39
CLIP4Q8N3C7 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CLIP4Q8N3C7 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC17.47■□□□□ 0.39
CLIP4Q8N3C7 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.47■□□□□ 0.39
CLIP4Q8N3C7 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CLIP4Q8N3C7 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CLIP4Q8N3C7 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
CLIP4Q8N3C7 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
CLIP4Q8N3C7 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLIP4Q8N3C7 AC004980.1-204ENST00000429707 299 ntBASIC17.47■□□□□ 0.39
CLIP4Q8N3C7 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLIP4Q8N3C7 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC17.47■□□□□ 0.39
CLIP4Q8N3C7 AC131212.4-201ENST00000623606 975 ntBASIC17.47■□□□□ 0.39
CLIP4Q8N3C7 AC083906.6-201ENST00000641366 219 ntBASIC17.47■□□□□ 0.39
CLIP4Q8N3C7 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLIP4Q8N3C7 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CLIP4Q8N3C7 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CLIP4Q8N3C7 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC17.47■□□□□ 0.39
CLIP4Q8N3C7 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC17.47■□□□□ 0.39
CLIP4Q8N3C7 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLIP4Q8N3C7 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLIP4Q8N3C7 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLIP4Q8N3C7 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLIP4Q8N3C7 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.47■□□□□ 0.39
CLIP4Q8N3C7 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLIP4Q8N3C7 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC17.47■□□□□ 0.39
CLIP4Q8N3C7 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLIP4Q8N3C7 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLIP4Q8N3C7 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CLIP4Q8N3C7 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLIP4Q8N3C7 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.46■□□□□ 0.39
CLIP4Q8N3C7 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.46■□□□□ 0.39
CLIP4Q8N3C7 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLIP4Q8N3C7 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC17.46■□□□□ 0.39
CLIP4Q8N3C7 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLIP4Q8N3C7 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC17.46■□□□□ 0.39
CLIP4Q8N3C7 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.39
CLIP4Q8N3C7 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CLIP4Q8N3C7 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.46■□□□□ 0.39
CLIP4Q8N3C7 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLIP4Q8N3C7 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
CLIP4Q8N3C7 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLIP4Q8N3C7 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLIP4Q8N3C7 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLIP4Q8N3C7 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLIP4Q8N3C7 PTPA-216ENST00000432651 857 ntTSL 2 BASIC17.46■□□□□ 0.39
CLIP4Q8N3C7 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
CLIP4Q8N3C7 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC17.46■□□□□ 0.39
CLIP4Q8N3C7 GLRB-205ENST00000512619 728 ntTSL 3 BASIC17.46■□□□□ 0.39
CLIP4Q8N3C7 RPPH1-201ENST00000516869 333 ntBASIC17.46■□□□□ 0.39
CLIP4Q8N3C7 MMD2-204ENST00000612910 778 ntTSL 5 BASIC17.46■□□□□ 0.39
CLIP4Q8N3C7 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLIP4Q8N3C7 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC17.46■□□□□ 0.39
CLIP4Q8N3C7 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC17.46■□□□□ 0.39
CLIP4Q8N3C7 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC17.46■□□□□ 0.39
CLIP4Q8N3C7 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLIP4Q8N3C7 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLIP4Q8N3C7 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLIP4Q8N3C7 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.46■□□□□ 0.39
CLIP4Q8N3C7 KRT8P11-201ENST00000409686 1436 ntBASIC17.46■□□□□ 0.39
CLIP4Q8N3C7 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.46■□□□□ 0.38
CLIP4Q8N3C7 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC17.45■□□□□ 0.38
CLIP4Q8N3C7 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLIP4Q8N3C7 AC090164.3-201ENST00000610780 2143 ntBASIC17.45■□□□□ 0.38
CLIP4Q8N3C7 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLIP4Q8N3C7 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLIP4Q8N3C7 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.45■□□□□ 0.38
CLIP4Q8N3C7 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
CLIP4Q8N3C7 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC17.45■□□□□ 0.38
CLIP4Q8N3C7 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLIP4Q8N3C7 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
CLIP4Q8N3C7 AP002982.1-201ENST00000492365 877 ntBASIC17.45■□□□□ 0.38
CLIP4Q8N3C7 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC17.45■□□□□ 0.38
CLIP4Q8N3C7 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC17.45■□□□□ 0.38
CLIP4Q8N3C7 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC17.45■□□□□ 0.38
CLIP4Q8N3C7 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CLIP4Q8N3C7 AL353708.3-201ENST00000610272 989 ntBASIC17.45■□□□□ 0.38
CLIP4Q8N3C7 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC17.45■□□□□ 0.38
CLIP4Q8N3C7 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
CLIP4Q8N3C7 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLIP4Q8N3C7 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.45■□□□□ 0.38
CLIP4Q8N3C7 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLIP4Q8N3C7 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLIP4Q8N3C7 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC17.45■□□□□ 0.38
CLIP4Q8N3C7 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CLIP4Q8N3C7 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLIP4Q8N3C7 AC079598.2-202ENST00000546624 1451 ntBASIC17.44■□□□□ 0.38
CLIP4Q8N3C7 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC17.44■□□□□ 0.38
CLIP4Q8N3C7 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
CLIP4Q8N3C7 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CLIP4Q8N3C7 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CLIP4Q8N3C7 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms