Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
CHD9Q3L8U1 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHD9Q3L8U1 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.74■□□□□ 0.75
CHD9Q3L8U1 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
CHD9Q3L8U1 AC004832.2-201ENST00000426397 482 ntBASIC19.74■□□□□ 0.75
CHD9Q3L8U1 CYMP-203ENST00000474680 1263 ntBASIC19.74■□□□□ 0.75
CHD9Q3L8U1 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC19.74■□□□□ 0.75
CHD9Q3L8U1 ZNF259P1-201ENST00000407656 1365 ntBASIC19.74■□□□□ 0.75
CHD9Q3L8U1 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
CHD9Q3L8U1 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
CHD9Q3L8U1 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHD9Q3L8U1 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC19.73■□□□□ 0.75
CHD9Q3L8U1 HIST2H3DP1-201ENST00000401004 416 ntBASIC19.73■□□□□ 0.75
CHD9Q3L8U1 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
CHD9Q3L8U1 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CHD9Q3L8U1 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.73■□□□□ 0.75
CHD9Q3L8U1 TEX21P-204ENST00000641479 1693 ntBASIC19.73■□□□□ 0.75
CHD9Q3L8U1 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
CHD9Q3L8U1 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHD9Q3L8U1 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC19.73■□□□□ 0.75
CHD9Q3L8U1 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC19.73■□□□□ 0.75
CHD9Q3L8U1 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHD9Q3L8U1 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHD9Q3L8U1 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHD9Q3L8U1 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHD9Q3L8U1 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC19.73■□□□□ 0.75
CHD9Q3L8U1 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CHD9Q3L8U1 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHD9Q3L8U1 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CHD9Q3L8U1 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC19.73■□□□□ 0.75
CHD9Q3L8U1 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC19.73■□□□□ 0.75
CHD9Q3L8U1 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC19.73■□□□□ 0.75
CHD9Q3L8U1 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHD9Q3L8U1 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CHD9Q3L8U1 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHD9Q3L8U1 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
CHD9Q3L8U1 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHD9Q3L8U1 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHD9Q3L8U1 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHD9Q3L8U1 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CHD9Q3L8U1 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CHD9Q3L8U1 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CHD9Q3L8U1 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHD9Q3L8U1 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CHD9Q3L8U1 AP006288.1-201ENST00000446065 395 ntBASIC19.72■□□□□ 0.75
CHD9Q3L8U1 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHD9Q3L8U1 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC19.72■□□□□ 0.75
CHD9Q3L8U1 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CHD9Q3L8U1 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHD9Q3L8U1 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHD9Q3L8U1 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHD9Q3L8U1 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHD9Q3L8U1 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC19.71■□□□□ 0.75
CHD9Q3L8U1 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC19.71■□□□□ 0.75
CHD9Q3L8U1 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC19.71■□□□□ 0.75
CHD9Q3L8U1 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC19.71■□□□□ 0.75
CHD9Q3L8U1 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHD9Q3L8U1 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CHD9Q3L8U1 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CHD9Q3L8U1 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHD9Q3L8U1 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.71■□□□□ 0.75
CHD9Q3L8U1 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CHD9Q3L8U1 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CHD9Q3L8U1 RPS2P1-201ENST00000434010 821 ntBASIC19.71■□□□□ 0.75
CHD9Q3L8U1 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC19.71■□□□□ 0.75
CHD9Q3L8U1 RPS15-207ENST00000591032 550 ntTSL 3 BASIC19.71■□□□□ 0.75
CHD9Q3L8U1 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CHD9Q3L8U1 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19.7■□□□□ 0.74
CHD9Q3L8U1 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
CHD9Q3L8U1 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CHD9Q3L8U1 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC19.7■□□□□ 0.74
CHD9Q3L8U1 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CHD9Q3L8U1 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CHD9Q3L8U1 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CHD9Q3L8U1 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
CHD9Q3L8U1 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.7■□□□□ 0.74
CHD9Q3L8U1 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.7■□□□□ 0.74
CHD9Q3L8U1 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC19.7■□□□□ 0.74
CHD9Q3L8U1 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC19.7■□□□□ 0.74
CHD9Q3L8U1 AC011840.4-201ENST00000578471 627 ntBASIC19.7■□□□□ 0.74
CHD9Q3L8U1 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CHD9Q3L8U1 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CHD9Q3L8U1 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
CHD9Q3L8U1 AP005117.1-201ENST00000584346 1413 ntBASIC19.7■□□□□ 0.74
CHD9Q3L8U1 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CHD9Q3L8U1 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.7■□□□□ 0.74
CHD9Q3L8U1 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
CHD9Q3L8U1 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
CHD9Q3L8U1 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC19.69■□□□□ 0.74
CHD9Q3L8U1 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.69■□□□□ 0.74
CHD9Q3L8U1 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CHD9Q3L8U1 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CHD9Q3L8U1 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CHD9Q3L8U1 AL157384.1-201ENST00000445995 2473 ntBASIC19.69■□□□□ 0.74
CHD9Q3L8U1 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC19.69■□□□□ 0.74
CHD9Q3L8U1 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CHD9Q3L8U1 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC19.69■□□□□ 0.74
CHD9Q3L8U1 AC034236.2-201ENST00000606662 1610 ntBASIC19.69■□□□□ 0.74
CHD9Q3L8U1 MED16-201ENST00000269814 1199 ntTSL 5 BASIC19.69■□□□□ 0.74
CHD9Q3L8U1 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms