Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
FOXA3P55318 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
FOXA3P55318 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.17
FOXA3P55318 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC14.02□□□□□ -0.17
FOXA3P55318 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC14.02□□□□□ -0.17
FOXA3P55318 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
FOXA3P55318 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
FOXA3P55318 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
FOXA3P55318 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
FOXA3P55318 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
FOXA3P55318 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA3P55318 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC14.01□□□□□ -0.17
FOXA3P55318 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA3P55318 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC14.01□□□□□ -0.17
FOXA3P55318 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA3P55318 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA3P55318 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA3P55318 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC14.01□□□□□ -0.17
FOXA3P55318 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
FOXA3P55318 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA3P55318 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA3P55318 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC14.01□□□□□ -0.17
FOXA3P55318 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA3P55318 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC14.01□□□□□ -0.17
FOXA3P55318 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA3P55318 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA3P55318 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA3P55318 NXN-202ENST00000537628 1340 ntTSL 3 BASIC14.01□□□□□ -0.17
FOXA3P55318 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC14.01□□□□□ -0.17
FOXA3P55318 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA3P55318 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA3P55318 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA3P55318 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC14.01□□□□□ -0.17
FOXA3P55318 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC14.01□□□□□ -0.17
FOXA3P55318 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
FOXA3P55318 AL589743.5-201ENST00000616611 1050 ntBASIC14.01□□□□□ -0.17
FOXA3P55318 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC14.01□□□□□ -0.17
FOXA3P55318 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
FOXA3P55318 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA3P55318 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC14.01□□□□□ -0.17
FOXA3P55318 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC14.01□□□□□ -0.17
FOXA3P55318 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA3P55318 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC14.01□□□□□ -0.17
FOXA3P55318 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA3P55318 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA3P55318 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC14.01□□□□□ -0.17
FOXA3P55318 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA3P55318 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA3P55318 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA3P55318 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA3P55318 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA3P55318 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC14□□□□□ -0.17
FOXA3P55318 GNE-204ENST00000539208 2190 ntTSL 2 BASIC14□□□□□ -0.17
FOXA3P55318 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA3P55318 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA3P55318 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC14□□□□□ -0.17
FOXA3P55318 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA3P55318 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA3P55318 SNAI3-AS1-205ENST00000568633 2096 ntBASIC14□□□□□ -0.17
FOXA3P55318 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA3P55318 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA3P55318 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA3P55318 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
FOXA3P55318 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC14□□□□□ -0.17
FOXA3P55318 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC14□□□□□ -0.17
FOXA3P55318 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC14□□□□□ -0.17
FOXA3P55318 AC080080.1-201ENST00000625121 2420 ntBASIC14□□□□□ -0.17
FOXA3P55318 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA3P55318 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA3P55318 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC14□□□□□ -0.17
FOXA3P55318 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA3P55318 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC14□□□□□ -0.17
FOXA3P55318 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA3P55318 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA3P55318 JTB-203ENST00000368589 1216 ntTSL 2 BASIC14□□□□□ -0.17
FOXA3P55318 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA3P55318 HES2-205ENST00000487437 968 ntTSL 3 BASIC14□□□□□ -0.17
FOXA3P55318 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC14□□□□□ -0.17
FOXA3P55318 GALNS-213ENST00000569433 723 ntTSL 3 BASIC14□□□□□ -0.17
FOXA3P55318 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC14□□□□□ -0.17
FOXA3P55318 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA3P55318 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC14□□□□□ -0.17
FOXA3P55318 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA3P55318 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC14□□□□□ -0.17
FOXA3P55318 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA3P55318 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA3P55318 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA3P55318 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
FOXA3P55318 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
FOXA3P55318 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA3P55318 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA3P55318 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA3P55318 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC13.99□□□□□ -0.17
FOXA3P55318 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA3P55318 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
FOXA3P55318 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA3P55318 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA3P55318 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA3P55318 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC13.99□□□□□ -0.17
FOXA3P55318 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms