Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
HMGCS2P54868 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC21.52■■□□□ 1.04
HMGCS2P54868 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC21.52■■□□□ 1.04
HMGCS2P54868 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC21.52■■□□□ 1.04
HMGCS2P54868 RN7SL606P-201ENST00000472779 293 ntBASIC21.52■■□□□ 1.04
HMGCS2P54868 GUSBP12-201ENST00000513727 720 ntBASIC21.52■■□□□ 1.04
HMGCS2P54868 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC21.52■■□□□ 1.04
HMGCS2P54868 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC21.52■■□□□ 1.04
HMGCS2P54868 SLC25A6P4-201ENST00000586535 553 ntBASIC21.52■■□□□ 1.04
HMGCS2P54868 AL353801.3-201ENST00000609898 542 ntBASIC21.52■■□□□ 1.04
HMGCS2P54868 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
HMGCS2P54868 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HMGCS2P54868 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HMGCS2P54868 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
HMGCS2P54868 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HMGCS2P54868 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
HMGCS2P54868 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC21.52■■□□□ 1.04
HMGCS2P54868 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
HMGCS2P54868 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.03
HMGCS2P54868 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
HMGCS2P54868 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC21.52■■□□□ 1.03
HMGCS2P54868 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC21.52■■□□□ 1.03
HMGCS2P54868 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
HMGCS2P54868 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
HMGCS2P54868 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
HMGCS2P54868 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
HMGCS2P54868 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
HMGCS2P54868 AL022342.1-201ENST00000400363 863 ntBASIC21.51■■□□□ 1.03
HMGCS2P54868 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
HMGCS2P54868 BET1L-206ENST00000486280 665 ntTSL 3 BASIC21.51■■□□□ 1.03
HMGCS2P54868 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC21.51■■□□□ 1.03
HMGCS2P54868 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC21.51■■□□□ 1.03
HMGCS2P54868 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC21.51■■□□□ 1.03
HMGCS2P54868 PPOX-214ENST00000535223 664 ntTSL 3 BASIC21.51■■□□□ 1.03
HMGCS2P54868 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
HMGCS2P54868 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC21.51■■□□□ 1.03
HMGCS2P54868 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC21.51■■□□□ 1.03
HMGCS2P54868 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
HMGCS2P54868 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
HMGCS2P54868 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC21.51■■□□□ 1.03
HMGCS2P54868 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
HMGCS2P54868 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
HMGCS2P54868 Z98044.1-201ENST00000632503 1764 ntBASIC21.51■■□□□ 1.03
HMGCS2P54868 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
HMGCS2P54868 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
HMGCS2P54868 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HMGCS2P54868 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HMGCS2P54868 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HMGCS2P54868 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HMGCS2P54868 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HMGCS2P54868 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HMGCS2P54868 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HMGCS2P54868 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
HMGCS2P54868 POLI-202ENST00000406285 2030 ntTSL 2 BASIC21.5■■□□□ 1.03
HMGCS2P54868 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
HMGCS2P54868 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HMGCS2P54868 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HMGCS2P54868 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC21.5■■□□□ 1.03
HMGCS2P54868 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC21.5■■□□□ 1.03
HMGCS2P54868 AC091607.1-201ENST00000490318 1060 ntBASIC21.5■■□□□ 1.03
HMGCS2P54868 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC21.5■■□□□ 1.03
HMGCS2P54868 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
HMGCS2P54868 AP005901.3-202ENST00000581653 237 ntBASIC21.5■■□□□ 1.03
HMGCS2P54868 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
HMGCS2P54868 AL121912.1-201ENST00000603683 238 ntBASIC21.5■■□□□ 1.03
HMGCS2P54868 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC21.5■■□□□ 1.03
HMGCS2P54868 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC21.5■■□□□ 1.03
HMGCS2P54868 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HMGCS2P54868 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC21.5■■□□□ 1.03
HMGCS2P54868 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
HMGCS2P54868 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
HMGCS2P54868 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
HMGCS2P54868 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HMGCS2P54868 AL353692.3-201ENST00000407031 1396 ntBASIC21.49■■□□□ 1.03
HMGCS2P54868 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
HMGCS2P54868 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HMGCS2P54868 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
HMGCS2P54868 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC21.49■■□□□ 1.03
HMGCS2P54868 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HMGCS2P54868 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HMGCS2P54868 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
HMGCS2P54868 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HMGCS2P54868 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HMGCS2P54868 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
HMGCS2P54868 MRPL3P1-201ENST00000400109 1033 ntBASIC21.49■■□□□ 1.03
HMGCS2P54868 AC079776.4-201ENST00000511039 504 ntBASIC21.49■■□□□ 1.03
HMGCS2P54868 AC106795.1-205ENST00000512851 1056 ntBASIC21.49■■□□□ 1.03
HMGCS2P54868 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC21.49■■□□□ 1.03
HMGCS2P54868 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC21.49■■□□□ 1.03
HMGCS2P54868 CALM3-211ENST00000598871 561 ntTSL 4 BASIC21.49■■□□□ 1.03
HMGCS2P54868 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HMGCS2P54868 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
HMGCS2P54868 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC21.49■■□□□ 1.03
HMGCS2P54868 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HMGCS2P54868 NSUN5P1-202ENST00000421140 1535 ntBASIC21.49■■□□□ 1.03
HMGCS2P54868 NSUN5P2-203ENST00000457352 1529 ntBASIC21.49■■□□□ 1.03
HMGCS2P54868 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC21.49■■□□□ 1.03
HMGCS2P54868 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
HMGCS2P54868 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HMGCS2P54868 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms