Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC025062.2-201ENST00000605477 670 ntBASIC22.68■■□□□ 1.22
BRCA1P38398 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
BRCA1P38398 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
BRCA1P38398 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
BRCA1P38398 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC22.68■■□□□ 1.22
BRCA1P38398 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
BRCA1P38398 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
BRCA1P38398 TP73-AS1-210ENST00000637775 1455 ntBASIC22.67■■□□□ 1.22
BRCA1P38398 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC22.67■■□□□ 1.22
BRCA1P38398 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
BRCA1P38398 CYMP-203ENST00000474680 1263 ntBASIC22.67■■□□□ 1.22
BRCA1P38398 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC22.67■■□□□ 1.22
BRCA1P38398 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC22.67■■□□□ 1.22
BRCA1P38398 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC22.67■■□□□ 1.22
BRCA1P38398 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC22.67■■□□□ 1.22
BRCA1P38398 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC22.67■■□□□ 1.22
BRCA1P38398 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
BRCA1P38398 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
BRCA1P38398 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
BRCA1P38398 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC22.66■■□□□ 1.22
BRCA1P38398 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC22.66■■□□□ 1.22
BRCA1P38398 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC22.66■■□□□ 1.22
BRCA1P38398 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
BRCA1P38398 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC22.66■■□□□ 1.22
BRCA1P38398 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
BRCA1P38398 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
BRCA1P38398 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
BRCA1P38398 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
BRCA1P38398 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC22.66■■□□□ 1.22
BRCA1P38398 HLA-J-201ENST00000462773 1622 ntBASIC22.66■■□□□ 1.22
BRCA1P38398 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC22.66■■□□□ 1.22
BRCA1P38398 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
BRCA1P38398 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
BRCA1P38398 KIRREL3-AS3-201ENST00000404882 831 ntBASIC22.66■■□□□ 1.22
BRCA1P38398 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
BRCA1P38398 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
BRCA1P38398 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC22.66■■□□□ 1.22
BRCA1P38398 STK25-234ENST00000535007 2459 ntTSL 2 BASIC22.66■■□□□ 1.22
BRCA1P38398 AL391422.3-201ENST00000603791 2761 ntBASIC22.65■■□□□ 1.22
BRCA1P38398 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC22.65■■□□□ 1.22
BRCA1P38398 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
BRCA1P38398 KRT8P32-201ENST00000512863 1461 ntBASIC22.65■■□□□ 1.22
BRCA1P38398 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
BRCA1P38398 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
BRCA1P38398 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC22.65■■□□□ 1.22
BRCA1P38398 Z82202.1-201ENST00000623446 1880 ntBASIC22.65■■□□□ 1.22
BRCA1P38398 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
BRCA1P38398 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC22.65■■□□□ 1.22
BRCA1P38398 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
BRCA1P38398 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
BRCA1P38398 RNA5SP416-201ENST00000516838 111 ntBASIC22.65■■□□□ 1.22
BRCA1P38398 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC22.65■■□□□ 1.22
BRCA1P38398 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC22.65■■□□□ 1.22
BRCA1P38398 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
BRCA1P38398 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
BRCA1P38398 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
BRCA1P38398 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
BRCA1P38398 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC22.64■■□□□ 1.22
BRCA1P38398 ABCD1P5-201ENST00000445663 754 ntBASIC22.64■■□□□ 1.22
BRCA1P38398 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC22.64■■□□□ 1.22
BRCA1P38398 RBSN-204ENST00000449050 903 ntTSL 2 BASIC22.64■■□□□ 1.22
BRCA1P38398 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC22.64■■□□□ 1.22
BRCA1P38398 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC22.64■■□□□ 1.22
BRCA1P38398 RPS15-207ENST00000591032 550 ntTSL 3 BASIC22.64■■□□□ 1.22
BRCA1P38398 COPE-211ENST00000600932 1144 ntTSL 5 BASIC22.64■■□□□ 1.22
BRCA1P38398 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
BRCA1P38398 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.22
BRCA1P38398 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.22
BRCA1P38398 LINC01521-201ENST00000504184 1943 ntBASIC22.64■■□□□ 1.22
BRCA1P38398 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.21
BRCA1P38398 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC22.64■■□□□ 1.21
BRCA1P38398 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
BRCA1P38398 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC22.64■■□□□ 1.21
BRCA1P38398 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC22.64■■□□□ 1.21
BRCA1P38398 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC22.64■■□□□ 1.21
BRCA1P38398 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC22.64■■□□□ 1.21
BRCA1P38398 CALY-203ENST00000368558 825 ntTSL 5 BASIC22.64■■□□□ 1.21
BRCA1P38398 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC22.64■■□□□ 1.21
BRCA1P38398 AC211486.1-202ENST00000416371 468 ntBASIC22.64■■□□□ 1.21
BRCA1P38398 AC211476.1-201ENST00000503899 468 ntBASIC22.64■■□□□ 1.21
BRCA1P38398 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC22.64■■□□□ 1.21
BRCA1P38398 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
BRCA1P38398 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
BRCA1P38398 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
BRCA1P38398 AC099778.1-201ENST00000568593 1911 ntBASIC22.63■■□□□ 1.21
BRCA1P38398 RPS2P28-201ENST00000314255 741 ntBASIC22.63■■□□□ 1.21
BRCA1P38398 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC22.63■■□□□ 1.21
BRCA1P38398 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
BRCA1P38398 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC22.63■■□□□ 1.21
BRCA1P38398 MIR3687-2-201ENST00000577708 61 ntBASIC22.63■■□□□ 1.21
BRCA1P38398 MIR3687-1-201ENST00000614492 61 ntBASIC22.63■■□□□ 1.21
BRCA1P38398 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
BRCA1P38398 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
BRCA1P38398 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
BRCA1P38398 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC22.63■■□□□ 1.21
BRCA1P38398 Z98044.1-201ENST00000632503 1764 ntBASIC22.63■■□□□ 1.21
BRCA1P38398 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC22.62■■□□□ 1.21
BRCA1P38398 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
BRCA1P38398 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
BRCA1P38398 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC22.62■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms