Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC17.88■□□□□ 0.45
COL5A1P20908 BNIP3P18-201ENST00000593976 575 ntBASIC17.88■□□□□ 0.45
COL5A1P20908 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL5A1P20908 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC17.88■□□□□ 0.45
COL5A1P20908 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
COL5A1P20908 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC17.88■□□□□ 0.45
COL5A1P20908 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL5A1P20908 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL5A1P20908 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL5A1P20908 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.88■□□□□ 0.45
COL5A1P20908 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL5A1P20908 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL5A1P20908 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
COL5A1P20908 MIR574-201ENST00000385209 96 ntBASIC17.88■□□□□ 0.45
COL5A1P20908 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
COL5A1P20908 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
COL5A1P20908 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC17.88■□□□□ 0.45
COL5A1P20908 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.88■□□□□ 0.45
COL5A1P20908 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC17.88■□□□□ 0.45
COL5A1P20908 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC17.88■□□□□ 0.45
COL5A1P20908 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL5A1P20908 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
COL5A1P20908 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.88■□□□□ 0.45
COL5A1P20908 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
COL5A1P20908 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC17.88■□□□□ 0.45
COL5A1P20908 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL5A1P20908 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
COL5A1P20908 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
COL5A1P20908 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL5A1P20908 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.87■□□□□ 0.45
COL5A1P20908 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL5A1P20908 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL5A1P20908 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL5A1P20908 KRT18P67-201ENST00000432816 1264 ntBASIC17.87■□□□□ 0.45
COL5A1P20908 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC17.87■□□□□ 0.45
COL5A1P20908 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.87■□□□□ 0.45
COL5A1P20908 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC17.87■□□□□ 0.45
COL5A1P20908 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC17.87■□□□□ 0.45
COL5A1P20908 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
COL5A1P20908 AC064862.7-201ENST00000604520 867 ntBASIC17.87■□□□□ 0.45
COL5A1P20908 MIR7706-201ENST00000613747 67 ntBASIC17.87■□□□□ 0.45
COL5A1P20908 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
COL5A1P20908 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL5A1P20908 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL5A1P20908 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL5A1P20908 AL353692.3-201ENST00000407031 1396 ntBASIC17.87■□□□□ 0.45
COL5A1P20908 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC17.87■□□□□ 0.45
COL5A1P20908 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL5A1P20908 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC17.87■□□□□ 0.45
COL5A1P20908 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL5A1P20908 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC17.86■□□□□ 0.45
COL5A1P20908 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL5A1P20908 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL5A1P20908 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
COL5A1P20908 AC018712.1-201ENST00000455767 687 ntBASIC17.86■□□□□ 0.45
COL5A1P20908 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
COL5A1P20908 KRT18P41-201ENST00000518924 1277 ntBASIC17.86■□□□□ 0.45
COL5A1P20908 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC17.86■□□□□ 0.45
COL5A1P20908 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
COL5A1P20908 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC17.86■□□□□ 0.45
COL5A1P20908 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC17.86■□□□□ 0.45
COL5A1P20908 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC17.86■□□□□ 0.45
COL5A1P20908 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC17.86■□□□□ 0.45
COL5A1P20908 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC17.86■□□□□ 0.45
COL5A1P20908 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL5A1P20908 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL5A1P20908 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL5A1P20908 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL5A1P20908 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC17.86■□□□□ 0.45
COL5A1P20908 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC17.86■□□□□ 0.45
COL5A1P20908 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
COL5A1P20908 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC17.86■□□□□ 0.45
COL5A1P20908 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL5A1P20908 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
COL5A1P20908 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL5A1P20908 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
COL5A1P20908 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL5A1P20908 TLE1-202ENST00000376484 666 ntTSL 3 BASIC17.86■□□□□ 0.45
COL5A1P20908 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.86■□□□□ 0.45
COL5A1P20908 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL5A1P20908 AL590627.1-203ENST00000421194 1026 ntBASIC17.86■□□□□ 0.45
COL5A1P20908 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL5A1P20908 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
COL5A1P20908 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC17.86■□□□□ 0.45
COL5A1P20908 IGHV3-41-201ENST00000613121 348 ntBASIC17.86■□□□□ 0.45
COL5A1P20908 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
COL5A1P20908 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
COL5A1P20908 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL5A1P20908 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL5A1P20908 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC17.85■□□□□ 0.45
COL5A1P20908 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC17.85■□□□□ 0.45
COL5A1P20908 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL5A1P20908 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
COL5A1P20908 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL5A1P20908 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL5A1P20908 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL5A1P20908 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC17.85■□□□□ 0.45
COL5A1P20908 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC17.85■□□□□ 0.45
COL5A1P20908 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL5A1P20908 CCS-201ENST00000310190 942 ntTSL 5 BASIC17.85■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms