Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL6A1P12109 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC20.56■□□□□ 0.88
COL6A1P12109 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL6A1P12109 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL6A1P12109 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A1P12109 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC20.55■□□□□ 0.88
COL6A1P12109 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A1P12109 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A1P12109 CCS-201ENST00000310190 942 ntTSL 5 BASIC20.55■□□□□ 0.88
COL6A1P12109 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A1P12109 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A1P12109 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC20.55■□□□□ 0.88
COL6A1P12109 HIST2H3DP1-201ENST00000401004 416 ntBASIC20.55■□□□□ 0.88
COL6A1P12109 UPF3AP3-201ENST00000420996 769 ntBASIC20.55■□□□□ 0.88
COL6A1P12109 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
COL6A1P12109 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC20.55■□□□□ 0.88
COL6A1P12109 REEP1-209ENST00000541910 969 ntTSL 2 BASIC20.55■□□□□ 0.88
COL6A1P12109 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC20.55■□□□□ 0.88
COL6A1P12109 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC20.55■□□□□ 0.88
COL6A1P12109 CAND2-206ENST00000626378 333 ntTSL 5 BASIC20.55■□□□□ 0.88
COL6A1P12109 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A1P12109 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A1P12109 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
COL6A1P12109 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A1P12109 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A1P12109 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC20.54■□□□□ 0.88
COL6A1P12109 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL6A1P12109 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.54■□□□□ 0.88
COL6A1P12109 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL6A1P12109 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC20.54■□□□□ 0.88
COL6A1P12109 AC096582.2-201ENST00000510860 516 ntBASIC20.54■□□□□ 0.88
COL6A1P12109 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
COL6A1P12109 IGHV3-22-201ENST00000520721 359 ntBASIC20.54■□□□□ 0.88
COL6A1P12109 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC20.54■□□□□ 0.88
COL6A1P12109 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL6A1P12109 NAT14-202ENST00000587400 416 ntTSL 5 BASIC20.54■□□□□ 0.88
COL6A1P12109 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC20.54■□□□□ 0.88
COL6A1P12109 AP001160.2-201ENST00000596071 487 ntBASIC20.54■□□□□ 0.88
COL6A1P12109 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL6A1P12109 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL6A1P12109 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL6A1P12109 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL6A1P12109 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL6A1P12109 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL6A1P12109 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL6A1P12109 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC20.54■□□□□ 0.88
COL6A1P12109 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC20.54■□□□□ 0.88
COL6A1P12109 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL6A1P12109 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL6A1P12109 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL6A1P12109 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL6A1P12109 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.53■□□□□ 0.88
COL6A1P12109 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL6A1P12109 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC20.53■□□□□ 0.88
COL6A1P12109 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.53■□□□□ 0.88
COL6A1P12109 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.53■□□□□ 0.88
COL6A1P12109 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
COL6A1P12109 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL6A1P12109 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL6A1P12109 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC20.53■□□□□ 0.88
COL6A1P12109 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL6A1P12109 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
COL6A1P12109 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC20.53■□□□□ 0.88
COL6A1P12109 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC20.53■□□□□ 0.88
COL6A1P12109 CD63-204ENST00000546939 779 ntTSL 3 BASIC20.53■□□□□ 0.88
COL6A1P12109 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC20.53■□□□□ 0.88
COL6A1P12109 AC027796.2-201ENST00000575326 344 ntBASIC20.53■□□□□ 0.88
COL6A1P12109 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL6A1P12109 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
COL6A1P12109 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL6A1P12109 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL6A1P12109 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL6A1P12109 AC006333.2-201ENST00000607957 2099 ntBASIC20.53■□□□□ 0.88
COL6A1P12109 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL6A1P12109 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL6A1P12109 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL6A1P12109 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL6A1P12109 AC034236.2-201ENST00000606662 1610 ntBASIC20.53■□□□□ 0.88
COL6A1P12109 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC20.53■□□□□ 0.88
COL6A1P12109 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
COL6A1P12109 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL6A1P12109 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
COL6A1P12109 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL6A1P12109 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL6A1P12109 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
COL6A1P12109 RPSAP43-201ENST00000402237 625 ntBASIC20.52■□□□□ 0.88
COL6A1P12109 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC20.52■□□□□ 0.88
COL6A1P12109 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC20.52■□□□□ 0.88
COL6A1P12109 AC098831.1-202ENST00000438821 336 ntBASIC20.52■□□□□ 0.88
COL6A1P12109 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC20.52■□□□□ 0.88
COL6A1P12109 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC20.52■□□□□ 0.88
COL6A1P12109 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL6A1P12109 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL6A1P12109 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20.52■□□□□ 0.88
COL6A1P12109 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL6A1P12109 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC20.52■□□□□ 0.88
COL6A1P12109 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC20.52■□□□□ 0.88
COL6A1P12109 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
COL6A1P12109 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
COL6A1P12109 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms