Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 Z69720.1-201ENST00000601483 472 ntBASIC21.18■□□□□ 0.98
COL11A1P12107 AC104692.2-201ENST00000603054 253 ntBASIC21.18■□□□□ 0.98
COL11A1P12107 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC21.17■□□□□ 0.98
COL11A1P12107 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
COL11A1P12107 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL11A1P12107 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL11A1P12107 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL11A1P12107 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC21.17■□□□□ 0.98
COL11A1P12107 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL11A1P12107 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL11A1P12107 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL11A1P12107 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL11A1P12107 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL11A1P12107 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL11A1P12107 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL11A1P12107 AKR1C7P-201ENST00000305623 895 ntBASIC21.17■□□□□ 0.98
COL11A1P12107 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL11A1P12107 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL11A1P12107 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
COL11A1P12107 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC21.17■□□□□ 0.98
COL11A1P12107 AC090616.6-201ENST00000582640 721 ntBASIC21.17■□□□□ 0.98
COL11A1P12107 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC21.17■□□□□ 0.98
COL11A1P12107 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL11A1P12107 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
COL11A1P12107 SNAI3-AS1-205ENST00000568633 2096 ntBASIC21.16■□□□□ 0.98
COL11A1P12107 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC21.16■□□□□ 0.98
COL11A1P12107 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL11A1P12107 IGHV3-47-201ENST00000425060 335 ntBASIC21.16■□□□□ 0.98
COL11A1P12107 AC113404.2-201ENST00000507884 177 ntBASIC21.16■□□□□ 0.98
COL11A1P12107 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
COL11A1P12107 ABR-204ENST00000543210 1049 ntTSL 2 BASIC21.16■□□□□ 0.98
COL11A1P12107 AL671883.3-201ENST00000603274 991 ntBASIC21.16■□□□□ 0.98
COL11A1P12107 TP73-AS1-207ENST00000624167 988 ntBASIC21.16■□□□□ 0.98
COL11A1P12107 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL11A1P12107 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
COL11A1P12107 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL11A1P12107 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
COL11A1P12107 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL11A1P12107 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL11A1P12107 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL11A1P12107 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL11A1P12107 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL11A1P12107 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL11A1P12107 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC21.15■□□□□ 0.98
COL11A1P12107 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL11A1P12107 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL11A1P12107 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC21.15■□□□□ 0.98
COL11A1P12107 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC21.15■□□□□ 0.98
COL11A1P12107 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL11A1P12107 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL11A1P12107 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL11A1P12107 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC21.15■□□□□ 0.98
COL11A1P12107 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
COL11A1P12107 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL11A1P12107 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL11A1P12107 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL11A1P12107 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL11A1P12107 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL11A1P12107 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
COL11A1P12107 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC21.15■□□□□ 0.98
COL11A1P12107 REEP1-209ENST00000541910 969 ntTSL 2 BASIC21.15■□□□□ 0.98
COL11A1P12107 TBCB-205ENST00000585746 875 ntTSL 3 BASIC21.15■□□□□ 0.98
COL11A1P12107 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL11A1P12107 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL11A1P12107 AL353692.3-201ENST00000407031 1396 ntBASIC21.14■□□□□ 0.98
COL11A1P12107 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
COL11A1P12107 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC21.14■□□□□ 0.98
COL11A1P12107 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.98
COL11A1P12107 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
COL11A1P12107 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
COL11A1P12107 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
COL11A1P12107 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC21.14■□□□□ 0.98
COL11A1P12107 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC21.14■□□□□ 0.98
COL11A1P12107 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
COL11A1P12107 NARF-204ENST00000390006 1766 ntTSL 2 BASIC21.14■□□□□ 0.98
COL11A1P12107 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL11A1P12107 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL11A1P12107 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL11A1P12107 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
COL11A1P12107 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC21.14■□□□□ 0.97
COL11A1P12107 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL11A1P12107 MRPL3P1-201ENST00000400109 1033 ntBASIC21.14■□□□□ 0.97
COL11A1P12107 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL11A1P12107 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC21.14■□□□□ 0.97
COL11A1P12107 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
COL11A1P12107 NUS1P1-201ENST00000446295 882 ntBASIC21.14■□□□□ 0.97
COL11A1P12107 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
COL11A1P12107 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL11A1P12107 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
COL11A1P12107 AL024508.2-201ENST00000607749 1894 ntBASIC21.14■□□□□ 0.97
COL11A1P12107 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC21.14■□□□□ 0.97
COL11A1P12107 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.14■□□□□ 0.97
COL11A1P12107 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC21.14■□□□□ 0.97
COL11A1P12107 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL11A1P12107 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL11A1P12107 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL11A1P12107 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL11A1P12107 AC099343.3-201ENST00000605834 2503 ntBASIC21.13■□□□□ 0.97
COL11A1P12107 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL11A1P12107 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms