Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL4A2P08572 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.77■□□□□ 0.6
COL4A2P08572 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC18.77■□□□□ 0.59
COL4A2P08572 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC18.77■□□□□ 0.59
COL4A2P08572 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
COL4A2P08572 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
COL4A2P08572 FAM197Y8-203ENST00000450145 560 ntBASIC18.77■□□□□ 0.59
COL4A2P08572 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC18.77■□□□□ 0.59
COL4A2P08572 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC18.77■□□□□ 0.59
COL4A2P08572 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC18.77■□□□□ 0.59
COL4A2P08572 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC18.77■□□□□ 0.59
COL4A2P08572 PAM16-208ENST00000573553 722 ntTSL 2 BASIC18.77■□□□□ 0.59
COL4A2P08572 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
COL4A2P08572 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC18.77■□□□□ 0.59
COL4A2P08572 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
COL4A2P08572 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
COL4A2P08572 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A2P08572 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A2P08572 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.76■□□□□ 0.59
COL4A2P08572 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A2P08572 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A2P08572 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A2P08572 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A2P08572 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
COL4A2P08572 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A2P08572 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC18.76■□□□□ 0.59
COL4A2P08572 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.76■□□□□ 0.59
COL4A2P08572 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A2P08572 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A2P08572 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
COL4A2P08572 AL031284.1-201ENST00000419297 478 ntBASIC18.76■□□□□ 0.59
COL4A2P08572 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC18.76■□□□□ 0.59
COL4A2P08572 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC18.76■□□□□ 0.59
COL4A2P08572 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC18.76■□□□□ 0.59
COL4A2P08572 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
COL4A2P08572 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A2P08572 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC18.76■□□□□ 0.59
COL4A2P08572 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A2P08572 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A2P08572 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC18.76■□□□□ 0.59
COL4A2P08572 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A2P08572 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A2P08572 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A2P08572 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.75■□□□□ 0.59
COL4A2P08572 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A2P08572 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A2P08572 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
COL4A2P08572 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A2P08572 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A2P08572 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC18.75■□□□□ 0.59
COL4A2P08572 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
COL4A2P08572 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC18.75■□□□□ 0.59
COL4A2P08572 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A2P08572 RPL18-209ENST00000550645 463 ntTSL 5 BASIC18.75■□□□□ 0.59
COL4A2P08572 RPL18-214ENST00000552588 559 ntTSL 3 BASIC18.75■□□□□ 0.59
COL4A2P08572 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A2P08572 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
COL4A2P08572 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC18.75■□□□□ 0.59
COL4A2P08572 AC114341.1-201ENST00000618070 349 ntBASIC18.75■□□□□ 0.59
COL4A2P08572 AC139530.3-201ENST00000620344 690 ntBASIC18.75■□□□□ 0.59
COL4A2P08572 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC18.75■□□□□ 0.59
COL4A2P08572 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A2P08572 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A2P08572 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A2P08572 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC18.75■□□□□ 0.59
COL4A2P08572 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.75■□□□□ 0.59
COL4A2P08572 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A2P08572 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A2P08572 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
COL4A2P08572 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A2P08572 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A2P08572 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC18.75■□□□□ 0.59
COL4A2P08572 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC18.74■□□□□ 0.59
COL4A2P08572 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC18.74■□□□□ 0.59
COL4A2P08572 KRT18P58-201ENST00000527480 1120 ntBASIC18.74■□□□□ 0.59
COL4A2P08572 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC18.74■□□□□ 0.59
COL4A2P08572 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A2P08572 NARF-204ENST00000390006 1766 ntTSL 2 BASIC18.74■□□□□ 0.59
COL4A2P08572 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC18.74■□□□□ 0.59
COL4A2P08572 UROS-202ENST00000368778 1556 ntTSL 2 BASIC18.74■□□□□ 0.59
COL4A2P08572 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A2P08572 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A2P08572 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A2P08572 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A2P08572 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A2P08572 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.74■□□□□ 0.59
COL4A2P08572 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC18.74■□□□□ 0.59
COL4A2P08572 FGFR3P6-201ENST00000457012 610 ntBASIC18.74■□□□□ 0.59
COL4A2P08572 MINOS1P3-201ENST00000457048 203 ntBASIC18.74■□□□□ 0.59
COL4A2P08572 AC145285.3-201ENST00000564603 959 ntBASIC18.74■□□□□ 0.59
COL4A2P08572 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A2P08572 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.74■□□□□ 0.59
COL4A2P08572 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A2P08572 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A2P08572 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A2P08572 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
COL4A2P08572 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.73■□□□□ 0.59
COL4A2P08572 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A2P08572 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
COL4A2P08572 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms