Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SPTA1P02549 AC211486.1-202ENST00000416371 468 ntBASIC16.87■□□□□ 0.29
SPTA1P02549 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC16.87■□□□□ 0.29
SPTA1P02549 AC211476.1-201ENST00000503899 468 ntBASIC16.87■□□□□ 0.29
SPTA1P02549 AC096582.2-201ENST00000510860 516 ntBASIC16.87■□□□□ 0.29
SPTA1P02549 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC16.87■□□□□ 0.29
SPTA1P02549 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
SPTA1P02549 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
SPTA1P02549 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SPTA1P02549 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
SPTA1P02549 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SPTA1P02549 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SPTA1P02549 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SPTA1P02549 RBM17P3-201ENST00000417687 1192 ntBASIC16.86■□□□□ 0.29
SPTA1P02549 FIS1-203ENST00000442303 631 ntTSL 3 BASIC16.86■□□□□ 0.29
SPTA1P02549 DNAJB3-201ENST00000446806 729 ntBASIC16.86■□□□□ 0.29
SPTA1P02549 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.86■□□□□ 0.29
SPTA1P02549 PPOX-214ENST00000535223 664 ntTSL 3 BASIC16.86■□□□□ 0.29
SPTA1P02549 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SPTA1P02549 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC16.86■□□□□ 0.29
SPTA1P02549 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SPTA1P02549 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SPTA1P02549 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SPTA1P02549 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC16.86■□□□□ 0.29
SPTA1P02549 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SPTA1P02549 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC16.86■□□□□ 0.29
SPTA1P02549 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SPTA1P02549 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SPTA1P02549 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SPTA1P02549 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC16.86■□□□□ 0.29
SPTA1P02549 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SPTA1P02549 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SPTA1P02549 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
SPTA1P02549 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SPTA1P02549 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
SPTA1P02549 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SPTA1P02549 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC16.86■□□□□ 0.29
SPTA1P02549 CAND2-206ENST00000626378 333 ntTSL 5 BASIC16.86■□□□□ 0.29
SPTA1P02549 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SPTA1P02549 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SPTA1P02549 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC16.86■□□□□ 0.29
SPTA1P02549 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC16.86■□□□□ 0.29
SPTA1P02549 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC16.85■□□□□ 0.29
SPTA1P02549 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SPTA1P02549 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
SPTA1P02549 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SPTA1P02549 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC16.85■□□□□ 0.29
SPTA1P02549 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
SPTA1P02549 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC16.85■□□□□ 0.29
SPTA1P02549 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.85■□□□□ 0.29
SPTA1P02549 RPSAP43-201ENST00000402237 625 ntBASIC16.85■□□□□ 0.29
SPTA1P02549 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC16.85■□□□□ 0.29
SPTA1P02549 AL591424.1-201ENST00000442569 1213 ntBASIC16.85■□□□□ 0.29
SPTA1P02549 AC024563.2-201ENST00000603282 481 ntBASIC16.85■□□□□ 0.29
SPTA1P02549 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
SPTA1P02549 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
SPTA1P02549 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
SPTA1P02549 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC16.85■□□□□ 0.29
SPTA1P02549 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SPTA1P02549 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SPTA1P02549 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SPTA1P02549 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
SPTA1P02549 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC16.85■□□□□ 0.29
SPTA1P02549 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SPTA1P02549 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
SPTA1P02549 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SPTA1P02549 HLA-J-201ENST00000462773 1622 ntBASIC16.85■□□□□ 0.29
SPTA1P02549 AL512408.1-201ENST00000569378 2000 ntBASIC16.85■□□□□ 0.29
SPTA1P02549 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SPTA1P02549 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC16.85■□□□□ 0.29
SPTA1P02549 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SPTA1P02549 NUS1P2-201ENST00000417358 873 ntBASIC16.85■□□□□ 0.29
SPTA1P02549 POM121L3P-201ENST00000419331 1163 ntBASIC16.85■□□□□ 0.29
SPTA1P02549 AC004832.2-201ENST00000426397 482 ntBASIC16.85■□□□□ 0.29
SPTA1P02549 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC16.85■□□□□ 0.29
SPTA1P02549 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC16.85■□□□□ 0.29
SPTA1P02549 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
SPTA1P02549 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC16.85■□□□□ 0.29
SPTA1P02549 FAM215A-202ENST00000632077 792 ntBASIC16.85■□□□□ 0.29
SPTA1P02549 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
SPTA1P02549 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC16.85■□□□□ 0.29
SPTA1P02549 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
SPTA1P02549 ZNF259P1-201ENST00000407656 1365 ntBASIC16.84■□□□□ 0.29
SPTA1P02549 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SPTA1P02549 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
SPTA1P02549 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC16.84■□□□□ 0.29
SPTA1P02549 PBK-203ENST00000522944 1499 ntTSL 2 BASIC16.84■□□□□ 0.29
SPTA1P02549 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
SPTA1P02549 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SPTA1P02549 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC16.84■□□□□ 0.29
SPTA1P02549 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SPTA1P02549 UPF3AP3-201ENST00000420996 769 ntBASIC16.84■□□□□ 0.29
SPTA1P02549 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
SPTA1P02549 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC16.84■□□□□ 0.29
SPTA1P02549 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
SPTA1P02549 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC16.84■□□□□ 0.29
SPTA1P02549 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC16.84■□□□□ 0.29
SPTA1P02549 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
SPTA1P02549 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
SPTA1P02549 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms