Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC18.22■□□□□ 0.51
SDC3O75056 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC18.22■□□□□ 0.51
SDC3O75056 PNN-202ENST00000553331 656 ntTSL 3 BASIC18.22■□□□□ 0.51
SDC3O75056 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC18.22■□□□□ 0.51
SDC3O75056 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SDC3O75056 LITAF-220ENST00000620789 692 ntTSL 5 BASIC18.22■□□□□ 0.51
SDC3O75056 FEM1AP3-201ENST00000403722 1741 ntBASIC18.22■□□□□ 0.51
SDC3O75056 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SDC3O75056 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC18.22■□□□□ 0.51
SDC3O75056 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
SDC3O75056 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.22■□□□□ 0.51
SDC3O75056 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SDC3O75056 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.22■□□□□ 0.51
SDC3O75056 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SDC3O75056 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SDC3O75056 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
SDC3O75056 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SDC3O75056 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
SDC3O75056 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
SDC3O75056 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SDC3O75056 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.22■□□□□ 0.51
SDC3O75056 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SDC3O75056 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.21■□□□□ 0.51
SDC3O75056 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SDC3O75056 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SDC3O75056 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.21■□□□□ 0.51
SDC3O75056 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SDC3O75056 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SDC3O75056 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
SDC3O75056 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SDC3O75056 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC18.21■□□□□ 0.51
SDC3O75056 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SDC3O75056 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SDC3O75056 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SDC3O75056 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.21■□□□□ 0.51
SDC3O75056 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SDC3O75056 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.21■□□□□ 0.51
SDC3O75056 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SDC3O75056 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC18.21■□□□□ 0.51
SDC3O75056 MIR564-202ENST00000385049 94 ntBASIC18.21■□□□□ 0.51
SDC3O75056 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SDC3O75056 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC18.21■□□□□ 0.51
SDC3O75056 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SDC3O75056 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC18.21■□□□□ 0.51
SDC3O75056 TPSP2-201ENST00000561760 610 ntBASIC18.21■□□□□ 0.51
SDC3O75056 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
SDC3O75056 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
SDC3O75056 AL732292.2-201ENST00000609649 430 ntBASIC18.21■□□□□ 0.51
SDC3O75056 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC18.21■□□□□ 0.51
SDC3O75056 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SDC3O75056 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
SDC3O75056 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SDC3O75056 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SDC3O75056 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SDC3O75056 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.21■□□□□ 0.51
SDC3O75056 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
SDC3O75056 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SDC3O75056 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.21■□□□□ 0.5
SDC3O75056 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.21■□□□□ 0.5
SDC3O75056 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.5
SDC3O75056 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC18.21■□□□□ 0.5
SDC3O75056 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.5
SDC3O75056 KRT8P32-201ENST00000512863 1461 ntBASIC18.2■□□□□ 0.5
SDC3O75056 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SDC3O75056 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SDC3O75056 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
SDC3O75056 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SDC3O75056 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SDC3O75056 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.2■□□□□ 0.5
SDC3O75056 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SDC3O75056 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.2■□□□□ 0.5
SDC3O75056 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18.2■□□□□ 0.5
SDC3O75056 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
SDC3O75056 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SDC3O75056 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC18.2■□□□□ 0.5
SDC3O75056 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
SDC3O75056 TOB2P1-201ENST00000469761 992 ntBASIC18.2■□□□□ 0.5
SDC3O75056 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SDC3O75056 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC18.2■□□□□ 0.5
SDC3O75056 MPI-205ENST00000562606 1052 ntTSL 3 BASIC18.2■□□□□ 0.5
SDC3O75056 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC18.2■□□□□ 0.5
SDC3O75056 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SDC3O75056 IFNL4P1-201ENST00000607083 540 ntBASIC18.2■□□□□ 0.5
SDC3O75056 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
SDC3O75056 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
SDC3O75056 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC18.2■□□□□ 0.5
SDC3O75056 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
SDC3O75056 HOXB1-202ENST00000577092 1414 ntBASIC18.2■□□□□ 0.5
SDC3O75056 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SDC3O75056 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SDC3O75056 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.2■□□□□ 0.5
SDC3O75056 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SDC3O75056 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC18.2■□□□□ 0.5
SDC3O75056 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC18.2■□□□□ 0.5
SDC3O75056 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.2■□□□□ 0.5
SDC3O75056 AC006333.2-201ENST00000607957 2099 ntBASIC18.19■□□□□ 0.5
SDC3O75056 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SDC3O75056 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
SDC3O75056 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
SDC3O75056 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms