Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
MSH4O15457 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
MSH4O15457 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
MSH4O15457 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
MSH4O15457 AL031133.1-201ENST00000406807 723 ntBASIC20.94■□□□□ 0.94
MSH4O15457 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
MSH4O15457 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC20.94■□□□□ 0.94
MSH4O15457 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
MSH4O15457 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC20.94■□□□□ 0.94
MSH4O15457 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
MSH4O15457 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC20.94■□□□□ 0.94
MSH4O15457 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
MSH4O15457 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
MSH4O15457 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
MSH4O15457 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
MSH4O15457 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
MSH4O15457 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
MSH4O15457 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC20.94■□□□□ 0.94
MSH4O15457 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
MSH4O15457 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC20.93■□□□□ 0.94
MSH4O15457 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
MSH4O15457 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
MSH4O15457 COPE-203ENST00000351079 907 ntTSL 2 BASIC20.93■□□□□ 0.94
MSH4O15457 AC112907.2-201ENST00000448639 330 ntBASIC20.93■□□□□ 0.94
MSH4O15457 AC034232.1-201ENST00000506026 1064 ntBASIC20.93■□□□□ 0.94
MSH4O15457 MED25-212ENST00000618715 1467 ntTSL 5 BASIC20.93■□□□□ 0.94
MSH4O15457 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
MSH4O15457 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
MSH4O15457 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
MSH4O15457 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
MSH4O15457 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
MSH4O15457 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
MSH4O15457 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
MSH4O15457 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC20.92■□□□□ 0.94
MSH4O15457 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
MSH4O15457 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
MSH4O15457 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
MSH4O15457 AC092597.1-201ENST00000487352 616 ntBASIC20.92■□□□□ 0.94
MSH4O15457 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC20.92■□□□□ 0.94
MSH4O15457 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC20.92■□□□□ 0.94
MSH4O15457 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC20.92■□□□□ 0.94
MSH4O15457 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
MSH4O15457 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
MSH4O15457 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
MSH4O15457 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
MSH4O15457 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
MSH4O15457 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC20.92■□□□□ 0.94
MSH4O15457 TNXA-203ENST00000507684 2038 ntBASIC20.92■□□□□ 0.94
MSH4O15457 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
MSH4O15457 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.91■□□□□ 0.94
MSH4O15457 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
MSH4O15457 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC20.91■□□□□ 0.94
MSH4O15457 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
MSH4O15457 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC20.91■□□□□ 0.94
MSH4O15457 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC20.91■□□□□ 0.94
MSH4O15457 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC20.91■□□□□ 0.94
MSH4O15457 AL671277.2-201ENST00000458060 996 ntBASIC20.91■□□□□ 0.94
MSH4O15457 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
MSH4O15457 AC087388.1-201ENST00000571370 1112 ntBASIC20.91■□□□□ 0.94
MSH4O15457 RMI2-205ENST00000576027 818 ntTSL 2 BASIC20.91■□□□□ 0.94
MSH4O15457 AC079602.3-201ENST00000623931 403 ntBASIC20.91■□□□□ 0.94
MSH4O15457 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
MSH4O15457 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
MSH4O15457 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
MSH4O15457 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
MSH4O15457 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC20.9■□□□□ 0.94
MSH4O15457 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MSH4O15457 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
MSH4O15457 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
MSH4O15457 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
MSH4O15457 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC20.9■□□□□ 0.94
MSH4O15457 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC20.9■□□□□ 0.94
MSH4O15457 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
MSH4O15457 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
MSH4O15457 AP000593.1-201ENST00000393668 712 ntBASIC20.9■□□□□ 0.94
MSH4O15457 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
MSH4O15457 NT5C-211ENST00000582170 653 ntTSL 3 BASIC20.9■□□□□ 0.94
MSH4O15457 MIR3180-4-201ENST00000582223 153 ntBASIC20.9■□□□□ 0.94
MSH4O15457 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
MSH4O15457 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
MSH4O15457 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
MSH4O15457 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
MSH4O15457 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MSH4O15457 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC20.9■□□□□ 0.94
MSH4O15457 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
MSH4O15457 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC20.9■□□□□ 0.94
MSH4O15457 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MSH4O15457 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
MSH4O15457 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC20.9■□□□□ 0.94
MSH4O15457 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
MSH4O15457 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.94
MSH4O15457 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
MSH4O15457 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
MSH4O15457 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
MSH4O15457 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
MSH4O15457 AC112777.1-201ENST00000540175 1423 ntBASIC20.89■□□□□ 0.94
MSH4O15457 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
MSH4O15457 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC20.89■□□□□ 0.93
MSH4O15457 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MSH4O15457 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms