Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CACNA1AO00555 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CACNA1AO00555 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CACNA1AO00555 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC17.51■□□□□ 0.39
CACNA1AO00555 ELK2AP-201ENST00000392510 1007 ntBASIC17.51■□□□□ 0.39
CACNA1AO00555 ANKRD18DP-204ENST00000455355 1975 ntBASIC17.51■□□□□ 0.39
CACNA1AO00555 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CACNA1AO00555 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC17.51■□□□□ 0.39
CACNA1AO00555 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC17.51■□□□□ 0.39
CACNA1AO00555 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC17.51■□□□□ 0.39
CACNA1AO00555 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC17.51■□□□□ 0.39
CACNA1AO00555 AL138831.2-201ENST00000606564 490 ntBASIC17.51■□□□□ 0.39
CACNA1AO00555 AL358472.5-202ENST00000641448 1267 ntBASIC17.51■□□□□ 0.39
CACNA1AO00555 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
CACNA1AO00555 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CACNA1AO00555 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
CACNA1AO00555 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CACNA1AO00555 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.51■□□□□ 0.39
CACNA1AO00555 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC17.51■□□□□ 0.39
CACNA1AO00555 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CACNA1AO00555 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CACNA1AO00555 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CACNA1AO00555 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC17.51■□□□□ 0.39
CACNA1AO00555 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
CACNA1AO00555 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CACNA1AO00555 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC17.51■□□□□ 0.39
CACNA1AO00555 NAA50-208ENST00000497255 789 ntTSL 5 BASIC17.51■□□□□ 0.39
CACNA1AO00555 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CACNA1AO00555 AC004449.1-201ENST00000564240 433 ntBASIC17.51■□□□□ 0.39
CACNA1AO00555 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CACNA1AO00555 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CACNA1AO00555 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CACNA1AO00555 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CACNA1AO00555 AC112777.1-201ENST00000540175 1423 ntBASIC17.5■□□□□ 0.39
CACNA1AO00555 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CACNA1AO00555 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CACNA1AO00555 CBR1-202ENST00000399191 838 ntTSL 3 BASIC17.5■□□□□ 0.39
CACNA1AO00555 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC17.5■□□□□ 0.39
CACNA1AO00555 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CACNA1AO00555 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC17.5■□□□□ 0.39
CACNA1AO00555 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CACNA1AO00555 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CACNA1AO00555 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CACNA1AO00555 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CACNA1AO00555 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC17.5■□□□□ 0.39
CACNA1AO00555 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC17.5■□□□□ 0.39
CACNA1AO00555 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC17.5■□□□□ 0.39
CACNA1AO00555 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CACNA1AO00555 AC068587.10-201ENST00000641210 219 ntBASIC17.5■□□□□ 0.39
CACNA1AO00555 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
CACNA1AO00555 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CACNA1AO00555 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CACNA1AO00555 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CACNA1AO00555 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CACNA1AO00555 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CACNA1AO00555 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CACNA1AO00555 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CACNA1AO00555 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
CACNA1AO00555 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CACNA1AO00555 TFAMP1-201ENST00000412727 736 ntBASIC17.49■□□□□ 0.39
CACNA1AO00555 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC17.49■□□□□ 0.39
CACNA1AO00555 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC17.49■□□□□ 0.39
CACNA1AO00555 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC17.49■□□□□ 0.39
CACNA1AO00555 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC17.49■□□□□ 0.39
CACNA1AO00555 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC17.49■□□□□ 0.39
CACNA1AO00555 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.49■□□□□ 0.39
CACNA1AO00555 AC025678.2-201ENST00000562061 970 ntBASIC17.49■□□□□ 0.39
CACNA1AO00555 MTDHP4-201ENST00000600287 670 ntBASIC17.49■□□□□ 0.39
CACNA1AO00555 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC17.49■□□□□ 0.39
CACNA1AO00555 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC17.49■□□□□ 0.39
CACNA1AO00555 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CACNA1AO00555 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CACNA1AO00555 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CACNA1AO00555 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CACNA1AO00555 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CACNA1AO00555 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC17.48■□□□□ 0.39
CACNA1AO00555 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CACNA1AO00555 FAM207CP-201ENST00000443486 507 ntBASIC17.48■□□□□ 0.39
CACNA1AO00555 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.48■□□□□ 0.39
CACNA1AO00555 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CACNA1AO00555 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CACNA1AO00555 AL109659.2-201ENST00000606809 1674 ntBASIC17.48■□□□□ 0.39
CACNA1AO00555 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CACNA1AO00555 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CACNA1AO00555 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CACNA1AO00555 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC17.48■□□□□ 0.39
CACNA1AO00555 COQ6-210ENST00000554920 649 ntTSL 3 BASIC17.48■□□□□ 0.39
CACNA1AO00555 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
CACNA1AO00555 CITED2-204ENST00000618718 901 ntTSL 2 BASIC17.48■□□□□ 0.39
CACNA1AO00555 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CACNA1AO00555 AL024507.2-201ENST00000606070 2574 ntBASIC17.47■□□□□ 0.39
CACNA1AO00555 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CACNA1AO00555 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CACNA1AO00555 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CACNA1AO00555 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CACNA1AO00555 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CACNA1AO00555 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC17.47■□□□□ 0.39
CACNA1AO00555 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC17.47■□□□□ 0.39
CACNA1AO00555 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CACNA1AO00555 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms