Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 MYC-208ENST00000641036 567 ntBASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HIF3AQ9Y2N7 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
HIF3AQ9Y2N7 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HIF3AQ9Y2N7 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
HIF3AQ9Y2N7 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HIF3AQ9Y2N7 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HIF3AQ9Y2N7 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC16.87■□□□□ 0.29
HIF3AQ9Y2N7 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HIF3AQ9Y2N7 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HIF3AQ9Y2N7 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HIF3AQ9Y2N7 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC16.87■□□□□ 0.29
HIF3AQ9Y2N7 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
HIF3AQ9Y2N7 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HIF3AQ9Y2N7 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HIF3AQ9Y2N7 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC16.87■□□□□ 0.29
HIF3AQ9Y2N7 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC16.87■□□□□ 0.29
HIF3AQ9Y2N7 AL390961.4-201ENST00000623958 2535 ntBASIC16.87■□□□□ 0.29
HIF3AQ9Y2N7 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
HIF3AQ9Y2N7 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HIF3AQ9Y2N7 PRORSD1P-201ENST00000295112 541 ntBASIC16.87■□□□□ 0.29
HIF3AQ9Y2N7 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HIF3AQ9Y2N7 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC16.87■□□□□ 0.29
HIF3AQ9Y2N7 FAM197Y1-201ENST00000421178 764 ntBASIC16.87■□□□□ 0.29
HIF3AQ9Y2N7 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC16.87■□□□□ 0.29
HIF3AQ9Y2N7 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC16.87■□□□□ 0.29
HIF3AQ9Y2N7 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC16.87■□□□□ 0.29
HIF3AQ9Y2N7 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC16.87■□□□□ 0.29
HIF3AQ9Y2N7 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC16.87■□□□□ 0.29
HIF3AQ9Y2N7 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HIF3AQ9Y2N7 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
HIF3AQ9Y2N7 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
HIF3AQ9Y2N7 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
HIF3AQ9Y2N7 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HIF3AQ9Y2N7 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC16.87■□□□□ 0.29
HIF3AQ9Y2N7 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HIF3AQ9Y2N7 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 MADD-208ENST00000405573 1823 ntTSL 5 BASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 AL357033.4-201ENST00000617703 1807 ntBASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 CD177P1-201ENST00000606252 935 ntBASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 AL499627.1-201ENST00000569373 2188 ntBASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 AL354751.1-201ENST00000412768 1863 ntBASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 RCC2P3-201ENST00000418112 1537 ntBASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC16.86■□□□□ 0.29
HIF3AQ9Y2N7 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC16.85■□□□□ 0.29
HIF3AQ9Y2N7 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms