Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
LRFN1Q9P244 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
LRFN1Q9P244 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LRFN1Q9P244 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LRFN1Q9P244 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
LRFN1Q9P244 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LRFN1Q9P244 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
LRFN1Q9P244 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
LRFN1Q9P244 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC17.14■□□□□ 0.33
LRFN1Q9P244 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LRFN1Q9P244 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
LRFN1Q9P244 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRFN1Q9P244 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC17.13■□□□□ 0.33
LRFN1Q9P244 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRFN1Q9P244 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.13■□□□□ 0.33
LRFN1Q9P244 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.13■□□□□ 0.33
LRFN1Q9P244 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRFN1Q9P244 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LRFN1Q9P244 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC17.13■□□□□ 0.33
LRFN1Q9P244 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
LRFN1Q9P244 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LRFN1Q9P244 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRFN1Q9P244 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRFN1Q9P244 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRFN1Q9P244 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRFN1Q9P244 KRT18P23-201ENST00000435622 1283 ntBASIC17.13■□□□□ 0.33
LRFN1Q9P244 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LRFN1Q9P244 NMU-205ENST00000511469 756 ntTSL 3 BASIC17.13■□□□□ 0.33
LRFN1Q9P244 PTK2-216ENST00000519881 863 ntTSL 3 BASIC17.13■□□□□ 0.33
LRFN1Q9P244 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.13■□□□□ 0.33
LRFN1Q9P244 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.13■□□□□ 0.33
LRFN1Q9P244 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC17.13■□□□□ 0.33
LRFN1Q9P244 AC093458.2-201ENST00000623150 629 ntBASIC17.13■□□□□ 0.33
LRFN1Q9P244 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
LRFN1Q9P244 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC17.13■□□□□ 0.33
LRFN1Q9P244 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC17.13■□□□□ 0.33
LRFN1Q9P244 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRFN1Q9P244 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRFN1Q9P244 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRFN1Q9P244 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LRFN1Q9P244 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRFN1Q9P244 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC17.13■□□□□ 0.33
LRFN1Q9P244 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LRFN1Q9P244 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRFN1Q9P244 KRT8P7-201ENST00000533003 1432 ntBASIC17.13■□□□□ 0.33
LRFN1Q9P244 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
LRFN1Q9P244 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRFN1Q9P244 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
LRFN1Q9P244 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
LRFN1Q9P244 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRFN1Q9P244 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRFN1Q9P244 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRFN1Q9P244 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRFN1Q9P244 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRFN1Q9P244 BET1L-202ENST00000332865 533 ntTSL 5 BASIC17.12■□□□□ 0.33
LRFN1Q9P244 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LRFN1Q9P244 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC17.12■□□□□ 0.33
LRFN1Q9P244 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
LRFN1Q9P244 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC17.12■□□□□ 0.33
LRFN1Q9P244 AC092597.1-201ENST00000487352 616 ntBASIC17.12■□□□□ 0.33
LRFN1Q9P244 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC17.12■□□□□ 0.33
LRFN1Q9P244 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC17.12■□□□□ 0.33
LRFN1Q9P244 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC17.12■□□□□ 0.33
LRFN1Q9P244 METTL23-204ENST00000586752 904 ntTSL 2 BASIC17.12■□□□□ 0.33
LRFN1Q9P244 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC17.12■□□□□ 0.33
LRFN1Q9P244 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRFN1Q9P244 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRFN1Q9P244 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC17.12■□□□□ 0.33
LRFN1Q9P244 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC17.12■□□□□ 0.33
LRFN1Q9P244 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRFN1Q9P244 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRFN1Q9P244 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LRFN1Q9P244 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
LRFN1Q9P244 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRFN1Q9P244 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LRFN1Q9P244 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRFN1Q9P244 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LRFN1Q9P244 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LRFN1Q9P244 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
LRFN1Q9P244 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LRFN1Q9P244 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
LRFN1Q9P244 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
LRFN1Q9P244 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
LRFN1Q9P244 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC17.11■□□□□ 0.33
LRFN1Q9P244 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
LRFN1Q9P244 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LRFN1Q9P244 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC17.11■□□□□ 0.33
LRFN1Q9P244 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
LRFN1Q9P244 MIR564-202ENST00000385049 94 ntBASIC17.11■□□□□ 0.33
LRFN1Q9P244 FXN-203ENST00000396366 922 ntTSL 2 BASIC17.11■□□□□ 0.33
LRFN1Q9P244 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.11■□□□□ 0.33
LRFN1Q9P244 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LRFN1Q9P244 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.11■□□□□ 0.33
LRFN1Q9P244 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.11■□□□□ 0.33
LRFN1Q9P244 USF2-205ENST00000594064 1179 ntTSL 2 BASIC17.11■□□□□ 0.33
LRFN1Q9P244 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC17.11■□□□□ 0.33
LRFN1Q9P244 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LRFN1Q9P244 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
LRFN1Q9P244 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LRFN1Q9P244 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms