Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC18.18■□□□□ 0.5
CCDC28BQ9BUN5 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC18.18■□□□□ 0.5
CCDC28BQ9BUN5 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC28BQ9BUN5 AC026185.1-201ENST00000445748 174 ntBASIC18.18■□□□□ 0.5
CCDC28BQ9BUN5 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.18■□□□□ 0.5
CCDC28BQ9BUN5 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
CCDC28BQ9BUN5 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC18.18■□□□□ 0.5
CCDC28BQ9BUN5 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC28BQ9BUN5 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
CCDC28BQ9BUN5 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC28BQ9BUN5 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC28BQ9BUN5 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CCDC28BQ9BUN5 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC28BQ9BUN5 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC28BQ9BUN5 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC28BQ9BUN5 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.18■□□□□ 0.5
CCDC28BQ9BUN5 BCL2-203ENST00000589955 5011 ntBASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 RHEB-204ENST00000472642 900 ntTSL 3 BASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC18.17■□□□□ 0.5
CCDC28BQ9BUN5 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC28BQ9BUN5 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.16■□□□□ 0.5
CCDC28BQ9BUN5 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC28BQ9BUN5 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC28BQ9BUN5 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC18.16■□□□□ 0.5
CCDC28BQ9BUN5 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC28BQ9BUN5 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC28BQ9BUN5 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC28BQ9BUN5 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC28BQ9BUN5 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC28BQ9BUN5 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC28BQ9BUN5 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.16■□□□□ 0.5
CCDC28BQ9BUN5 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC28BQ9BUN5 KRT8P32-201ENST00000512863 1461 ntBASIC18.16■□□□□ 0.5
CCDC28BQ9BUN5 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.16■□□□□ 0.5
CCDC28BQ9BUN5 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.16■□□□□ 0.5
CCDC28BQ9BUN5 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
CCDC28BQ9BUN5 AC008687.6-201ENST00000596318 630 ntBASIC18.16■□□□□ 0.5
CCDC28BQ9BUN5 AL121832.2-201ENST00000610979 668 ntBASIC18.16■□□□□ 0.5
CCDC28BQ9BUN5 MYC-209ENST00000641252 345 ntBASIC18.16■□□□□ 0.5
CCDC28BQ9BUN5 KRT8P41-201ENST00000533985 1514 ntBASIC18.16■□□□□ 0.5
CCDC28BQ9BUN5 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
CCDC28BQ9BUN5 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC28BQ9BUN5 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
CCDC28BQ9BUN5 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CCDC28BQ9BUN5 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC28BQ9BUN5 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC28BQ9BUN5 PXK-206ENST00000463280 2825 ntTSL 2 BASIC18.16■□□□□ 0.5
CCDC28BQ9BUN5 HTR7P1-202ENST00000624664 4411 ntBASIC18.16■□□□□ 0.5
CCDC28BQ9BUN5 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.15■□□□□ 0.5
CCDC28BQ9BUN5 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC28BQ9BUN5 CEP83-AS1-201ENST00000623122 2482 ntBASIC18.15■□□□□ 0.5
CCDC28BQ9BUN5 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.15■□□□□ 0.5
CCDC28BQ9BUN5 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC18.15■□□□□ 0.5
CCDC28BQ9BUN5 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC28BQ9BUN5 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.15■□□□□ 0.5
CCDC28BQ9BUN5 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC28BQ9BUN5 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
CCDC28BQ9BUN5 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
CCDC28BQ9BUN5 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
CCDC28BQ9BUN5 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC28BQ9BUN5 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC28BQ9BUN5 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC28BQ9BUN5 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC28BQ9BUN5 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
CCDC28BQ9BUN5 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms