Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.13■□□□□ 0.33
TIMP4Q99727 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TIMP4Q99727 BICD1-207ENST00000551848 1962 ntBASIC17.13■□□□□ 0.33
TIMP4Q99727 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TIMP4Q99727 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TIMP4Q99727 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC17.13■□□□□ 0.33
TIMP4Q99727 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TIMP4Q99727 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TIMP4Q99727 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TIMP4Q99727 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC17.13■□□□□ 0.33
TIMP4Q99727 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.13■□□□□ 0.33
TIMP4Q99727 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17.13■□□□□ 0.33
TIMP4Q99727 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TIMP4Q99727 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC17.13■□□□□ 0.33
TIMP4Q99727 AL512604.3-201ENST00000569583 964 ntBASIC17.13■□□□□ 0.33
TIMP4Q99727 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC17.13■□□□□ 0.33
TIMP4Q99727 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TIMP4Q99727 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TIMP4Q99727 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TIMP4Q99727 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
TIMP4Q99727 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TIMP4Q99727 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC17.13■□□□□ 0.33
TIMP4Q99727 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TIMP4Q99727 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TIMP4Q99727 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
TIMP4Q99727 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TIMP4Q99727 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TIMP4Q99727 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC17.12■□□□□ 0.33
TIMP4Q99727 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TIMP4Q99727 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TIMP4Q99727 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TIMP4Q99727 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TIMP4Q99727 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.12■□□□□ 0.33
TIMP4Q99727 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TIMP4Q99727 ARMC10P1-201ENST00000313754 855 ntBASIC17.12■□□□□ 0.33
TIMP4Q99727 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TIMP4Q99727 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TIMP4Q99727 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC17.12■□□□□ 0.33
TIMP4Q99727 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TIMP4Q99727 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
TIMP4Q99727 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC17.12■□□□□ 0.33
TIMP4Q99727 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
TIMP4Q99727 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TIMP4Q99727 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC17.12■□□□□ 0.33
TIMP4Q99727 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.12■□□□□ 0.33
TIMP4Q99727 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TIMP4Q99727 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC17.12■□□□□ 0.33
TIMP4Q99727 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC17.12■□□□□ 0.33
TIMP4Q99727 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
TIMP4Q99727 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
TIMP4Q99727 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TIMP4Q99727 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
TIMP4Q99727 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TIMP4Q99727 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TIMP4Q99727 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TIMP4Q99727 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC17.11■□□□□ 0.33
TIMP4Q99727 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TIMP4Q99727 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TIMP4Q99727 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TIMP4Q99727 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
TIMP4Q99727 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TIMP4Q99727 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TIMP4Q99727 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TIMP4Q99727 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
TIMP4Q99727 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TIMP4Q99727 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
TIMP4Q99727 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.11■□□□□ 0.33
TIMP4Q99727 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC17.11■□□□□ 0.33
TIMP4Q99727 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
TIMP4Q99727 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
TIMP4Q99727 AK4P3-201ENST00000418260 669 ntBASIC17.11■□□□□ 0.33
TIMP4Q99727 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC17.11■□□□□ 0.33
TIMP4Q99727 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC17.11■□□□□ 0.33
TIMP4Q99727 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TIMP4Q99727 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
TIMP4Q99727 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TIMP4Q99727 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
TIMP4Q99727 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TIMP4Q99727 AC141257.4-201ENST00000634557 245 ntBASIC17.11■□□□□ 0.33
TIMP4Q99727 AC136944.6-201ENST00000634818 245 ntBASIC17.11■□□□□ 0.33
TIMP4Q99727 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
TIMP4Q99727 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TIMP4Q99727 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC17.11■□□□□ 0.33
TIMP4Q99727 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TIMP4Q99727 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
TIMP4Q99727 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TIMP4Q99727 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TIMP4Q99727 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TIMP4Q99727 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC17.11■□□□□ 0.33
TIMP4Q99727 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
TIMP4Q99727 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TIMP4Q99727 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
TIMP4Q99727 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
TIMP4Q99727 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TIMP4Q99727 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TIMP4Q99727 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
TIMP4Q99727 AL354751.1-201ENST00000412768 1863 ntBASIC17.1■□□□□ 0.33
TIMP4Q99727 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TIMP4Q99727 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TIMP4Q99727 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms