Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 KRT17P3-201ENST00000420566 1262 ntBASIC20.17■□□□□ 0.82
CCDC42Q96M95 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC20.17■□□□□ 0.82
CCDC42Q96M95 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC42Q96M95 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.17■□□□□ 0.82
CCDC42Q96M95 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC20.17■□□□□ 0.82
CCDC42Q96M95 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC42Q96M95 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC20.17■□□□□ 0.82
CCDC42Q96M95 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC20.17■□□□□ 0.82
CCDC42Q96M95 MYC-208ENST00000641036 567 ntBASIC20.17■□□□□ 0.82
CCDC42Q96M95 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
CCDC42Q96M95 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC42Q96M95 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC42Q96M95 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC42Q96M95 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC20.17■□□□□ 0.82
CCDC42Q96M95 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC20.17■□□□□ 0.82
CCDC42Q96M95 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC20.17■□□□□ 0.82
CCDC42Q96M95 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC42Q96M95 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC20.17■□□□□ 0.82
CCDC42Q96M95 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC42Q96M95 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC42Q96M95 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC42Q96M95 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC42Q96M95 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC42Q96M95 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC42Q96M95 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC20.16■□□□□ 0.82
CCDC42Q96M95 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC42Q96M95 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC42Q96M95 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC20.16■□□□□ 0.82
CCDC42Q96M95 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CCDC42Q96M95 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC20.16■□□□□ 0.82
CCDC42Q96M95 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC42Q96M95 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC42Q96M95 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC20.16■□□□□ 0.82
CCDC42Q96M95 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC20.16■□□□□ 0.82
CCDC42Q96M95 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC42Q96M95 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC42Q96M95 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC42Q96M95 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
CCDC42Q96M95 KRT8P32-201ENST00000512863 1461 ntBASIC20.16■□□□□ 0.82
CCDC42Q96M95 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC42Q96M95 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC42Q96M95 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC20.16■□□□□ 0.82
CCDC42Q96M95 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC42Q96M95 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC42Q96M95 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CCDC42Q96M95 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC42Q96M95 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC42Q96M95 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC42Q96M95 AC067852.2-201ENST00000590513 2313 ntBASIC20.15■□□□□ 0.82
CCDC42Q96M95 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC42Q96M95 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC42Q96M95 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC42Q96M95 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC42Q96M95 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
CCDC42Q96M95 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC20.15■□□□□ 0.82
CCDC42Q96M95 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC42Q96M95 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC42Q96M95 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC42Q96M95 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC42Q96M95 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC42Q96M95 AC069544.1-201ENST00000609399 999 ntBASIC20.15■□□□□ 0.82
CCDC42Q96M95 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC20.15■□□□□ 0.82
CCDC42Q96M95 KRT8P11-201ENST00000409686 1436 ntBASIC20.15■□□□□ 0.82
CCDC42Q96M95 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC42Q96M95 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC20.15■□□□□ 0.82
CCDC42Q96M95 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC20.15■□□□□ 0.82
CCDC42Q96M95 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC42Q96M95 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC20.15■□□□□ 0.82
CCDC42Q96M95 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC42Q96M95 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC20.15■□□□□ 0.82
CCDC42Q96M95 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC42Q96M95 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC20.15■□□□□ 0.82
CCDC42Q96M95 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC20.15■□□□□ 0.82
CCDC42Q96M95 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC42Q96M95 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC42Q96M95 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC42Q96M95 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC42Q96M95 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.82
CCDC42Q96M95 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
CCDC42Q96M95 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC20.14■□□□□ 0.81
CCDC42Q96M95 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC42Q96M95 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC42Q96M95 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC42Q96M95 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC42Q96M95 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC42Q96M95 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
CCDC42Q96M95 GAS7-202ENST00000396115 929 ntTSL 5 BASIC20.14■□□□□ 0.81
CCDC42Q96M95 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC42Q96M95 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC42Q96M95 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC42Q96M95 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC20.14■□□□□ 0.81
CCDC42Q96M95 AP003097.1-201ENST00000530657 1135 ntBASIC20.14■□□□□ 0.81
CCDC42Q96M95 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC20.14■□□□□ 0.81
CCDC42Q96M95 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC20.14■□□□□ 0.81
CCDC42Q96M95 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC20.14■□□□□ 0.81
CCDC42Q96M95 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC42Q96M95 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC42Q96M95 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC20.14■□□□□ 0.81
CCDC42Q96M95 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC42Q96M95 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms