Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC18.72■□□□□ 0.59
HMGB4Q8WW32 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC18.72■□□□□ 0.59
HMGB4Q8WW32 AC005332.3-201ENST00000589904 676 ntBASIC18.72■□□□□ 0.59
HMGB4Q8WW32 LINC01711-201ENST00000598340 967 ntBASIC18.72■□□□□ 0.59
HMGB4Q8WW32 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC18.72■□□□□ 0.59
HMGB4Q8WW32 AL121772.3-201ENST00000610840 674 ntBASIC18.72■□□□□ 0.59
HMGB4Q8WW32 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HMGB4Q8WW32 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGB4Q8WW32 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGB4Q8WW32 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
HMGB4Q8WW32 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.72■□□□□ 0.59
HMGB4Q8WW32 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC18.72■□□□□ 0.59
HMGB4Q8WW32 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGB4Q8WW32 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC18.72■□□□□ 0.59
HMGB4Q8WW32 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGB4Q8WW32 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC18.72■□□□□ 0.59
HMGB4Q8WW32 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC18.72■□□□□ 0.59
HMGB4Q8WW32 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB4Q8WW32 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB4Q8WW32 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB4Q8WW32 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB4Q8WW32 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.71■□□□□ 0.59
HMGB4Q8WW32 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB4Q8WW32 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB4Q8WW32 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB4Q8WW32 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB4Q8WW32 TSPY19P-201ENST00000418461 509 ntBASIC18.71■□□□□ 0.59
HMGB4Q8WW32 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC18.71■□□□□ 0.59
HMGB4Q8WW32 TSPY18P-201ENST00000441642 509 ntBASIC18.71■□□□□ 0.59
HMGB4Q8WW32 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC18.71■□□□□ 0.59
HMGB4Q8WW32 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC18.71■□□□□ 0.59
HMGB4Q8WW32 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC18.71■□□□□ 0.59
HMGB4Q8WW32 AC012615.1-201ENST00000565797 1299 ntBASIC18.71■□□□□ 0.59
HMGB4Q8WW32 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC18.71■□□□□ 0.59
HMGB4Q8WW32 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB4Q8WW32 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB4Q8WW32 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB4Q8WW32 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB4Q8WW32 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
HMGB4Q8WW32 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
HMGB4Q8WW32 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
HMGB4Q8WW32 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
HMGB4Q8WW32 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HMGB4Q8WW32 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HMGB4Q8WW32 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HMGB4Q8WW32 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
HMGB4Q8WW32 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HMGB4Q8WW32 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC18.7■□□□□ 0.58
HMGB4Q8WW32 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC18.7■□□□□ 0.58
HMGB4Q8WW32 IGHV3-41-201ENST00000613121 348 ntBASIC18.7■□□□□ 0.58
HMGB4Q8WW32 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
HMGB4Q8WW32 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.7■□□□□ 0.58
HMGB4Q8WW32 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC18.7■□□□□ 0.58
HMGB4Q8WW32 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
HMGB4Q8WW32 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC18.7■□□□□ 0.58
HMGB4Q8WW32 PBK-203ENST00000522944 1499 ntTSL 2 BASIC18.7■□□□□ 0.58
HMGB4Q8WW32 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC18.7■□□□□ 0.58
HMGB4Q8WW32 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC18.7■□□□□ 0.58
HMGB4Q8WW32 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.7■□□□□ 0.58
HMGB4Q8WW32 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
HMGB4Q8WW32 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC18.69■□□□□ 0.58
HMGB4Q8WW32 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.69■□□□□ 0.58
HMGB4Q8WW32 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
HMGB4Q8WW32 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.69■□□□□ 0.58
HMGB4Q8WW32 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC18.69■□□□□ 0.58
HMGB4Q8WW32 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.69■□□□□ 0.58
HMGB4Q8WW32 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB4Q8WW32 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB4Q8WW32 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB4Q8WW32 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB4Q8WW32 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC18.69■□□□□ 0.58
HMGB4Q8WW32 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC18.69■□□□□ 0.58
HMGB4Q8WW32 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB4Q8WW32 AC104819.1-201ENST00000504587 486 ntBASIC18.69■□□□□ 0.58
HMGB4Q8WW32 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC18.69■□□□□ 0.58
HMGB4Q8WW32 AC090616.6-201ENST00000582640 721 ntBASIC18.69■□□□□ 0.58
HMGB4Q8WW32 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC18.69■□□□□ 0.58
HMGB4Q8WW32 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB4Q8WW32 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC18.69■□□□□ 0.58
HMGB4Q8WW32 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC18.69■□□□□ 0.58
HMGB4Q8WW32 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC18.69■□□□□ 0.58
HMGB4Q8WW32 AC034236.2-201ENST00000606662 1610 ntBASIC18.69■□□□□ 0.58
HMGB4Q8WW32 KRT8P32-201ENST00000512863 1461 ntBASIC18.69■□□□□ 0.58
HMGB4Q8WW32 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB4Q8WW32 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
HMGB4Q8WW32 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB4Q8WW32 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB4Q8WW32 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB4Q8WW32 RNF165-205ENST00000588679 2904 ntBASIC18.69■□□□□ 0.58
HMGB4Q8WW32 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB4Q8WW32 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB4Q8WW32 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
HMGB4Q8WW32 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB4Q8WW32 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB4Q8WW32 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
HMGB4Q8WW32 AC006333.2-201ENST00000607957 2099 ntBASIC18.69■□□□□ 0.58
HMGB4Q8WW32 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HMGB4Q8WW32 FEM1AP3-201ENST00000403722 1741 ntBASIC18.69■□□□□ 0.58
HMGB4Q8WW32 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
HMGB4Q8WW32 LINC01521-201ENST00000504184 1943 ntBASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms