Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC60Q8IWA6 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC20.77■□□□□ 0.92
CCDC60Q8IWA6 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC60Q8IWA6 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC60Q8IWA6 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC60Q8IWA6 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC20.77■□□□□ 0.92
CCDC60Q8IWA6 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
CCDC60Q8IWA6 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CCDC60Q8IWA6 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
CCDC60Q8IWA6 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
CCDC60Q8IWA6 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC60Q8IWA6 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC20.76■□□□□ 0.91
CCDC60Q8IWA6 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC60Q8IWA6 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC60Q8IWA6 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.76■□□□□ 0.91
CCDC60Q8IWA6 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC20.76■□□□□ 0.91
CCDC60Q8IWA6 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC20.76■□□□□ 0.91
CCDC60Q8IWA6 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
CCDC60Q8IWA6 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC60Q8IWA6 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC20.76■□□□□ 0.91
CCDC60Q8IWA6 AL645929.1-201ENST00000420084 975 ntBASIC20.76■□□□□ 0.91
CCDC60Q8IWA6 HLA-F-220ENST00000434407 884 ntBASIC20.76■□□□□ 0.91
CCDC60Q8IWA6 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC20.76■□□□□ 0.91
CCDC60Q8IWA6 CNP-204ENST00000472031 1019 ntTSL 2 BASIC20.76■□□□□ 0.91
CCDC60Q8IWA6 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC60Q8IWA6 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC60Q8IWA6 USF2-205ENST00000594064 1179 ntTSL 2 BASIC20.76■□□□□ 0.91
CCDC60Q8IWA6 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC20.76■□□□□ 0.91
CCDC60Q8IWA6 AL136038.4-201ENST00000603606 1261 ntBASIC20.76■□□□□ 0.91
CCDC60Q8IWA6 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC60Q8IWA6 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC20.76■□□□□ 0.91
CCDC60Q8IWA6 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC20.76■□□□□ 0.91
CCDC60Q8IWA6 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC60Q8IWA6 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC20.76■□□□□ 0.91
CCDC60Q8IWA6 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC60Q8IWA6 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC60Q8IWA6 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.76■□□□□ 0.91
CCDC60Q8IWA6 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC60Q8IWA6 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC60Q8IWA6 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC60Q8IWA6 AL391807.1-203ENST00000604392 2365 ntBASIC20.75■□□□□ 0.91
CCDC60Q8IWA6 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC60Q8IWA6 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC60Q8IWA6 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC60Q8IWA6 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC60Q8IWA6 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC20.75■□□□□ 0.91
CCDC60Q8IWA6 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC60Q8IWA6 CYP51A1P1-201ENST00000492267 1507 ntBASIC20.75■□□□□ 0.91
CCDC60Q8IWA6 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC60Q8IWA6 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC60Q8IWA6 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC60Q8IWA6 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC20.75■□□□□ 0.91
CCDC60Q8IWA6 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC60Q8IWA6 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC20.75■□□□□ 0.91
CCDC60Q8IWA6 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC20.75■□□□□ 0.91
CCDC60Q8IWA6 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC60Q8IWA6 NDUFV2-AS1-203ENST00000608008 779 ntBASIC20.75■□□□□ 0.91
CCDC60Q8IWA6 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC60Q8IWA6 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC60Q8IWA6 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC60Q8IWA6 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC60Q8IWA6 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC60Q8IWA6 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC20.74■□□□□ 0.91
CCDC60Q8IWA6 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC60Q8IWA6 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC60Q8IWA6 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC60Q8IWA6 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC60Q8IWA6 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC60Q8IWA6 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC20.74■□□□□ 0.91
CCDC60Q8IWA6 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
CCDC60Q8IWA6 KRT8P50-201ENST00000562022 1438 ntBASIC20.74■□□□□ 0.91
CCDC60Q8IWA6 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC60Q8IWA6 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC20.74■□□□□ 0.91
CCDC60Q8IWA6 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC60Q8IWA6 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC60Q8IWA6 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC20.73■□□□□ 0.91
CCDC60Q8IWA6 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC60Q8IWA6 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC60Q8IWA6 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
CCDC60Q8IWA6 SNAI3-AS1-205ENST00000568633 2096 ntBASIC20.73■□□□□ 0.91
CCDC60Q8IWA6 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC60Q8IWA6 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
CCDC60Q8IWA6 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC60Q8IWA6 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
CCDC60Q8IWA6 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC20.73■□□□□ 0.91
CCDC60Q8IWA6 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC60Q8IWA6 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC20.73■□□□□ 0.91
CCDC60Q8IWA6 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC20.73■□□□□ 0.91
CCDC60Q8IWA6 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC60Q8IWA6 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC60Q8IWA6 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC20.73■□□□□ 0.91
CCDC60Q8IWA6 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC60Q8IWA6 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC60Q8IWA6 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC20.73■□□□□ 0.91
CCDC60Q8IWA6 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC20.73■□□□□ 0.91
CCDC60Q8IWA6 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
CCDC60Q8IWA6 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC60Q8IWA6 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC60Q8IWA6 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC60Q8IWA6 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms