Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CHD9Q3L8U1 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHD9Q3L8U1 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.78■□□□□ 0.76
CHD9Q3L8U1 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CHD9Q3L8U1 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
CHD9Q3L8U1 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC19.78■□□□□ 0.76
CHD9Q3L8U1 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHD9Q3L8U1 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
CHD9Q3L8U1 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CHD9Q3L8U1 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC19.78■□□□□ 0.76
CHD9Q3L8U1 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC19.78■□□□□ 0.76
CHD9Q3L8U1 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC19.78■□□□□ 0.76
CHD9Q3L8U1 AC093909.1-201ENST00000504731 1122 ntBASIC19.78■□□□□ 0.76
CHD9Q3L8U1 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC19.78■□□□□ 0.76
CHD9Q3L8U1 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC19.78■□□□□ 0.76
CHD9Q3L8U1 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC19.78■□□□□ 0.76
CHD9Q3L8U1 AC005336.2-201ENST00000593183 939 ntBASIC19.78■□□□□ 0.76
CHD9Q3L8U1 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHD9Q3L8U1 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHD9Q3L8U1 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHD9Q3L8U1 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHD9Q3L8U1 AL353692.3-201ENST00000407031 1396 ntBASIC19.78■□□□□ 0.76
CHD9Q3L8U1 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
CHD9Q3L8U1 AC006333.2-201ENST00000607957 2099 ntBASIC19.78■□□□□ 0.76
CHD9Q3L8U1 YBX2P1-201ENST00000394192 760 ntBASIC19.77■□□□□ 0.76
CHD9Q3L8U1 AP001269.4-201ENST00000609611 512 ntBASIC19.77■□□□□ 0.76
CHD9Q3L8U1 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CHD9Q3L8U1 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.77■□□□□ 0.76
CHD9Q3L8U1 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHD9Q3L8U1 AC104109.2-201ENST00000602919 1418 ntBASIC19.77■□□□□ 0.76
CHD9Q3L8U1 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC19.77■□□□□ 0.76
CHD9Q3L8U1 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHD9Q3L8U1 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHD9Q3L8U1 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.77■□□□□ 0.76
CHD9Q3L8U1 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CHD9Q3L8U1 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC19.77■□□□□ 0.76
CHD9Q3L8U1 TP73-202ENST00000354437 2140 ntTSL 5 BASIC19.77■□□□□ 0.76
CHD9Q3L8U1 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
CHD9Q3L8U1 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC19.77■□□□□ 0.76
CHD9Q3L8U1 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC19.77■□□□□ 0.75
CHD9Q3L8U1 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC19.77■□□□□ 0.75
CHD9Q3L8U1 SART3-203ENST00000546611 1184 ntBASIC19.77■□□□□ 0.75
CHD9Q3L8U1 MIR3197-201ENST00000582241 73 ntBASIC19.77■□□□□ 0.75
CHD9Q3L8U1 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
CHD9Q3L8U1 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
CHD9Q3L8U1 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHD9Q3L8U1 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHD9Q3L8U1 RCC2P3-201ENST00000418112 1537 ntBASIC19.76■□□□□ 0.75
CHD9Q3L8U1 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC19.76■□□□□ 0.75
CHD9Q3L8U1 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHD9Q3L8U1 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHD9Q3L8U1 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHD9Q3L8U1 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CHD9Q3L8U1 POM121L3P-201ENST00000419331 1163 ntBASIC19.76■□□□□ 0.75
CHD9Q3L8U1 AC112482.1-201ENST00000492080 688 ntBASIC19.76■□□□□ 0.75
CHD9Q3L8U1 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC19.76■□□□□ 0.75
CHD9Q3L8U1 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
CHD9Q3L8U1 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHD9Q3L8U1 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.76■□□□□ 0.75
CHD9Q3L8U1 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHD9Q3L8U1 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC19.76■□□□□ 0.75
CHD9Q3L8U1 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CHD9Q3L8U1 ELP6-205ENST00000439305 880 ntTSL 2 BASIC19.76■□□□□ 0.75
CHD9Q3L8U1 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHD9Q3L8U1 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC19.76■□□□□ 0.75
CHD9Q3L8U1 MIR3180-4-201ENST00000582223 153 ntBASIC19.76■□□□□ 0.75
CHD9Q3L8U1 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CHD9Q3L8U1 AC024563.2-201ENST00000603282 481 ntBASIC19.76■□□□□ 0.75
CHD9Q3L8U1 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.76■□□□□ 0.75
CHD9Q3L8U1 AC012676.1-201ENST00000574705 1949 ntBASIC19.76■□□□□ 0.75
CHD9Q3L8U1 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHD9Q3L8U1 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC19.75■□□□□ 0.75
CHD9Q3L8U1 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CHD9Q3L8U1 RBM17P3-201ENST00000417687 1192 ntBASIC19.75■□□□□ 0.75
CHD9Q3L8U1 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC19.75■□□□□ 0.75
CHD9Q3L8U1 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.75■□□□□ 0.75
CHD9Q3L8U1 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC19.75■□□□□ 0.75
CHD9Q3L8U1 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CHD9Q3L8U1 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC19.75■□□□□ 0.75
CHD9Q3L8U1 LINC01521-201ENST00000504184 1943 ntBASIC19.75■□□□□ 0.75
CHD9Q3L8U1 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
CHD9Q3L8U1 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CHD9Q3L8U1 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC19.75■□□□□ 0.75
CHD9Q3L8U1 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
CHD9Q3L8U1 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CHD9Q3L8U1 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
CHD9Q3L8U1 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CHD9Q3L8U1 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC19.75■□□□□ 0.75
CHD9Q3L8U1 RFPL4AP1-201ENST00000530883 850 ntBASIC19.75■□□□□ 0.75
CHD9Q3L8U1 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC19.75■□□□□ 0.75
CHD9Q3L8U1 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CHD9Q3L8U1 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
CHD9Q3L8U1 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CHD9Q3L8U1 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CHD9Q3L8U1 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC19.74■□□□□ 0.75
CHD9Q3L8U1 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHD9Q3L8U1 DNAJB3-202ENST00000449667 1266 ntBASIC19.74■□□□□ 0.75
CHD9Q3L8U1 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHD9Q3L8U1 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHD9Q3L8U1 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms