Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFC3P40938 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RFC3P40938 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RFC3P40938 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFC3P40938 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
RFC3P40938 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
RFC3P40938 DBP-204ENST00000599385 709 ntTSL 3 BASIC17.09■□□□□ 0.33
RFC3P40938 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC17.09■□□□□ 0.33
RFC3P40938 AL121956.5-201ENST00000625261 221 ntBASIC17.09■□□□□ 0.33
RFC3P40938 AP000550.4-202ENST00000639755 178 ntBASIC17.09■□□□□ 0.33
RFC3P40938 IER3-202ENST00000376377 1350 ntBASIC17.09■□□□□ 0.33
RFC3P40938 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.09■□□□□ 0.33
RFC3P40938 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFC3P40938 RCC2P3-201ENST00000418112 1537 ntBASIC17.09■□□□□ 0.33
RFC3P40938 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RFC3P40938 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFC3P40938 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.09■□□□□ 0.33
RFC3P40938 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RFC3P40938 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RFC3P40938 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFC3P40938 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFC3P40938 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RFC3P40938 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFC3P40938 AC093484.2-201ENST00000580996 2166 ntBASIC17.09■□□□□ 0.33
RFC3P40938 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
RFC3P40938 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
RFC3P40938 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RFC3P40938 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RFC3P40938 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
RFC3P40938 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RFC3P40938 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RFC3P40938 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RFC3P40938 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFC3P40938 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC17.08■□□□□ 0.32
RFC3P40938 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFC3P40938 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC17.08■□□□□ 0.32
RFC3P40938 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFC3P40938 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFC3P40938 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RFC3P40938 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.08■□□□□ 0.32
RFC3P40938 KATNBL1P6-202ENST00000562413 1466 ntBASIC17.08■□□□□ 0.32
RFC3P40938 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC17.08■□□□□ 0.32
RFC3P40938 LINC01311-201ENST00000565162 1445 ntBASIC17.08■□□□□ 0.32
RFC3P40938 AC005332.1-201ENST00000577698 1310 ntBASIC17.08■□□□□ 0.32
RFC3P40938 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RFC3P40938 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFC3P40938 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.08■□□□□ 0.32
RFC3P40938 VENTXP5-201ENST00000523979 775 ntBASIC17.08■□□□□ 0.32
RFC3P40938 CD81-212ENST00000526072 1172 ntTSL 5 BASIC17.08■□□□□ 0.32
RFC3P40938 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFC3P40938 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RFC3P40938 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RFC3P40938 MIR3180-5-201ENST00000583743 153 ntBASIC17.08■□□□□ 0.32
RFC3P40938 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC17.08■□□□□ 0.32
RFC3P40938 METTL23-204ENST00000586752 904 ntTSL 2 BASIC17.08■□□□□ 0.32
RFC3P40938 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
RFC3P40938 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RFC3P40938 AC083849.1-201ENST00000615227 514 ntBASIC17.08■□□□□ 0.32
RFC3P40938 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RFC3P40938 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFC3P40938 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
RFC3P40938 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFC3P40938 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.32
RFC3P40938 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC17.08■□□□□ 0.32
RFC3P40938 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFC3P40938 AL032819.2-201ENST00000624543 2162 ntBASIC17.08■□□□□ 0.32
RFC3P40938 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC17.08■□□□□ 0.32
RFC3P40938 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFC3P40938 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFC3P40938 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RFC3P40938 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RFC3P40938 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
RFC3P40938 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC17.07■□□□□ 0.32
RFC3P40938 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC17.07■□□□□ 0.32
RFC3P40938 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC17.07■□□□□ 0.32
RFC3P40938 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.07■□□□□ 0.32
RFC3P40938 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RFC3P40938 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RFC3P40938 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RFC3P40938 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
RFC3P40938 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RFC3P40938 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC17.07■□□□□ 0.32
RFC3P40938 STARP1-201ENST00000397973 869 ntBASIC17.07■□□□□ 0.32
RFC3P40938 COPS8-203ENST00000409334 794 ntTSL 5 BASIC17.07■□□□□ 0.32
RFC3P40938 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC17.07■□□□□ 0.32
RFC3P40938 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RFC3P40938 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC17.07■□□□□ 0.32
RFC3P40938 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC17.07■□□□□ 0.32
RFC3P40938 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC17.07■□□□□ 0.32
RFC3P40938 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
RFC3P40938 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
RFC3P40938 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC17.07■□□□□ 0.32
RFC3P40938 AC008556.1-201ENST00000610908 2040 ntBASIC17.07■□□□□ 0.32
RFC3P40938 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC17.07■□□□□ 0.32
RFC3P40938 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC17.07■□□□□ 0.32
RFC3P40938 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RFC3P40938 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RFC3P40938 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RFC3P40938 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC17.06■□□□□ 0.32
RFC3P40938 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms