Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC19.37■□□□□ 0.69
HMGA1P17096 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC19.37■□□□□ 0.69
HMGA1P17096 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
HMGA1P17096 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC19.36■□□□□ 0.69
HMGA1P17096 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGA1P17096 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HMGA1P17096 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGA1P17096 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC19.36■□□□□ 0.69
HMGA1P17096 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC19.36■□□□□ 0.69
HMGA1P17096 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC19.36■□□□□ 0.69
HMGA1P17096 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
HMGA1P17096 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HMGA1P17096 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC19.36■□□□□ 0.69
HMGA1P17096 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC19.36■□□□□ 0.69
HMGA1P17096 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC19.36■□□□□ 0.69
HMGA1P17096 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
HMGA1P17096 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HMGA1P17096 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
HMGA1P17096 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGA1P17096 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGA1P17096 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HMGA1P17096 CHCHD2P8-201ENST00000429873 447 ntBASIC19.36■□□□□ 0.69
HMGA1P17096 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC19.36■□□□□ 0.69
HMGA1P17096 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HMGA1P17096 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC19.36■□□□□ 0.69
HMGA1P17096 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGA1P17096 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC19.36■□□□□ 0.69
HMGA1P17096 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC19.36■□□□□ 0.69
HMGA1P17096 REEP1-209ENST00000541910 969 ntTSL 2 BASIC19.36■□□□□ 0.69
HMGA1P17096 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC19.36■□□□□ 0.69
HMGA1P17096 AP002414.4-201ENST00000589764 1148 ntBASIC19.36■□□□□ 0.69
HMGA1P17096 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGA1P17096 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGA1P17096 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGA1P17096 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGA1P17096 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGA1P17096 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HMGA1P17096 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
HMGA1P17096 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
HMGA1P17096 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC19.35■□□□□ 0.69
HMGA1P17096 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
HMGA1P17096 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HMGA1P17096 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC19.35■□□□□ 0.69
HMGA1P17096 AL450487.1-201ENST00000426799 995 ntBASIC19.35■□□□□ 0.69
HMGA1P17096 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC19.35■□□□□ 0.69
HMGA1P17096 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC19.35■□□□□ 0.69
HMGA1P17096 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC19.35■□□□□ 0.69
HMGA1P17096 MPI-205ENST00000562606 1052 ntTSL 3 BASIC19.35■□□□□ 0.69
HMGA1P17096 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC19.35■□□□□ 0.69
HMGA1P17096 AC005332.3-201ENST00000589904 676 ntBASIC19.35■□□□□ 0.69
HMGA1P17096 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC19.35■□□□□ 0.69
HMGA1P17096 AL121894.2-201ENST00000602977 491 ntBASIC19.35■□□□□ 0.69
HMGA1P17096 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC19.35■□□□□ 0.69
HMGA1P17096 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
HMGA1P17096 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HMGA1P17096 Z83836.1-201ENST00000624605 1642 ntBASIC19.35■□□□□ 0.69
HMGA1P17096 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HMGA1P17096 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC19.35■□□□□ 0.69
HMGA1P17096 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HMGA1P17096 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC19.34■□□□□ 0.69
HMGA1P17096 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HMGA1P17096 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC19.34■□□□□ 0.69
HMGA1P17096 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HMGA1P17096 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HMGA1P17096 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
HMGA1P17096 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
HMGA1P17096 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HMGA1P17096 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.34■□□□□ 0.69
HMGA1P17096 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HMGA1P17096 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HMGA1P17096 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HMGA1P17096 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC19.34■□□□□ 0.69
HMGA1P17096 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC19.34■□□□□ 0.69
HMGA1P17096 AP003733.1-201ENST00000491725 852 ntBASIC19.34■□□□□ 0.69
HMGA1P17096 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC19.34■□□□□ 0.69
HMGA1P17096 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC19.34■□□□□ 0.69
HMGA1P17096 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
HMGA1P17096 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
HMGA1P17096 AL390719.2-201ENST00000606993 987 ntBASIC19.34■□□□□ 0.69
HMGA1P17096 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC19.34■□□□□ 0.69
HMGA1P17096 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
HMGA1P17096 VPS72-207ENST00000640458 689 ntTSL 5 BASIC19.34■□□□□ 0.69
HMGA1P17096 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HMGA1P17096 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.34■□□□□ 0.69
HMGA1P17096 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC19.34■□□□□ 0.69
HMGA1P17096 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC19.34■□□□□ 0.69
HMGA1P17096 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HMGA1P17096 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HMGA1P17096 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC19.34■□□□□ 0.69
HMGA1P17096 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
HMGA1P17096 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HMGA1P17096 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HMGA1P17096 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
HMGA1P17096 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HMGA1P17096 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HMGA1P17096 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HMGA1P17096 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
HMGA1P17096 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.33■□□□□ 0.69
HMGA1P17096 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
HMGA1P17096 BAALC-202ENST00000306391 243 ntTSL 5 BASIC19.33■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms