Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
RTN3O95197 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
RTN3O95197 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
RTN3O95197 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RTN3O95197 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
RTN3O95197 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
RTN3O95197 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RTN3O95197 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
RTN3O95197 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RTN3O95197 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RTN3O95197 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
RTN3O95197 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RTN3O95197 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RTN3O95197 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RTN3O95197 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC19.67■□□□□ 0.74
RTN3O95197 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RTN3O95197 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RTN3O95197 AL359075.1-203ENST00000462729 1002 ntBASIC19.67■□□□□ 0.74
RTN3O95197 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC19.67■□□□□ 0.74
RTN3O95197 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC19.67■□□□□ 0.74
RTN3O95197 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC19.67■□□□□ 0.74
RTN3O95197 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC19.67■□□□□ 0.74
RTN3O95197 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
RTN3O95197 AC008556.1-201ENST00000610908 2040 ntBASIC19.67■□□□□ 0.74
RTN3O95197 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC19.67■□□□□ 0.74
RTN3O95197 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
RTN3O95197 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RTN3O95197 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC19.67■□□□□ 0.74
RTN3O95197 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC19.67■□□□□ 0.74
RTN3O95197 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
RTN3O95197 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC19.67■□□□□ 0.74
RTN3O95197 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC19.66■□□□□ 0.74
RTN3O95197 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
RTN3O95197 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
RTN3O95197 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RTN3O95197 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
RTN3O95197 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
RTN3O95197 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RTN3O95197 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RTN3O95197 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
RTN3O95197 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
RTN3O95197 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
RTN3O95197 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RTN3O95197 STARP1-201ENST00000397973 869 ntBASIC19.66■□□□□ 0.74
RTN3O95197 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
RTN3O95197 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
RTN3O95197 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
RTN3O95197 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RTN3O95197 CD81-212ENST00000526072 1172 ntTSL 5 BASIC19.66■□□□□ 0.74
RTN3O95197 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC19.66■□□□□ 0.74
RTN3O95197 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
RTN3O95197 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
RTN3O95197 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RTN3O95197 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
RTN3O95197 KRT8P7-201ENST00000533003 1432 ntBASIC19.66■□□□□ 0.74
RTN3O95197 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
RTN3O95197 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
RTN3O95197 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RTN3O95197 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
RTN3O95197 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
RTN3O95197 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
RTN3O95197 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC19.65■□□□□ 0.74
RTN3O95197 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC19.65■□□□□ 0.74
RTN3O95197 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
RTN3O95197 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RTN3O95197 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
RTN3O95197 SNX5-210ENST00000481323 562 ntTSL 3 BASIC19.65■□□□□ 0.74
RTN3O95197 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC19.65■□□□□ 0.74
RTN3O95197 AC034232.1-201ENST00000506026 1064 ntBASIC19.65■□□□□ 0.74
RTN3O95197 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
RTN3O95197 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC19.65■□□□□ 0.74
RTN3O95197 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC19.65■□□□□ 0.74
RTN3O95197 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC19.65■□□□□ 0.74
RTN3O95197 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC19.65■□□□□ 0.74
RTN3O95197 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC19.65■□□□□ 0.74
RTN3O95197 AC112497.1-201ENST00000624824 639 ntBASIC19.65■□□□□ 0.74
RTN3O95197 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RTN3O95197 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC19.65■□□□□ 0.74
RTN3O95197 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC19.65■□□□□ 0.74
RTN3O95197 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RTN3O95197 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RTN3O95197 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RTN3O95197 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RTN3O95197 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
RTN3O95197 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
RTN3O95197 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.74
RTN3O95197 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC19.64■□□□□ 0.74
RTN3O95197 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
RTN3O95197 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.74
RTN3O95197 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
RTN3O95197 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RTN3O95197 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RTN3O95197 MIR564-202ENST00000385049 94 ntBASIC19.64■□□□□ 0.73
RTN3O95197 AL031133.1-201ENST00000406807 723 ntBASIC19.64■□□□□ 0.73
RTN3O95197 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC19.64■□□□□ 0.73
RTN3O95197 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC19.64■□□□□ 0.73
RTN3O95197 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
RTN3O95197 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
RTN3O95197 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC19.64■□□□□ 0.73
RTN3O95197 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms