Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHOX2O60902 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC18.72■□□□□ 0.59
SHOX2O60902 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC18.72■□□□□ 0.59
SHOX2O60902 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHOX2O60902 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHOX2O60902 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHOX2O60902 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SHOX2O60902 GCK-205ENST00000437084 1385 ntTSL 5 BASIC18.72■□□□□ 0.59
SHOX2O60902 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHOX2O60902 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHOX2O60902 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC18.72■□□□□ 0.59
SHOX2O60902 NME9-203ENST00000383180 2133 ntTSL 2 BASIC18.72■□□□□ 0.59
SHOX2O60902 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC18.72■□□□□ 0.59
SHOX2O60902 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC18.72■□□□□ 0.59
SHOX2O60902 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC18.72■□□□□ 0.59
SHOX2O60902 AC016405.3-201ENST00000607710 860 ntBASIC18.72■□□□□ 0.59
SHOX2O60902 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.72■□□□□ 0.59
SHOX2O60902 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.72■□□□□ 0.59
SHOX2O60902 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHOX2O60902 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHOX2O60902 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHOX2O60902 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
SHOX2O60902 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHOX2O60902 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHOX2O60902 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHOX2O60902 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHOX2O60902 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHOX2O60902 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SHOX2O60902 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
SHOX2O60902 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
SHOX2O60902 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
SHOX2O60902 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC18.71■□□□□ 0.59
SHOX2O60902 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHOX2O60902 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHOX2O60902 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHOX2O60902 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHOX2O60902 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SHOX2O60902 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHOX2O60902 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHOX2O60902 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHOX2O60902 AK1-201ENST00000223836 736 ntTSL 3 BASIC18.71■□□□□ 0.59
SHOX2O60902 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SHOX2O60902 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
SHOX2O60902 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC18.71■□□□□ 0.59
SHOX2O60902 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC18.71■□□□□ 0.59
SHOX2O60902 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC18.71■□□□□ 0.59
SHOX2O60902 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC18.71■□□□□ 0.59
SHOX2O60902 SP2-202ENST00000613139 908 ntTSL 5 BASIC18.71■□□□□ 0.59
SHOX2O60902 MYC-208ENST00000641036 567 ntBASIC18.71■□□□□ 0.59
SHOX2O60902 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHOX2O60902 KRT8P8-201ENST00000434750 1448 ntBASIC18.71■□□□□ 0.59
SHOX2O60902 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.71■□□□□ 0.59
SHOX2O60902 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHOX2O60902 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHOX2O60902 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHOX2O60902 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SHOX2O60902 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SHOX2O60902 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHOX2O60902 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
SHOX2O60902 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.58
SHOX2O60902 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.71■□□□□ 0.58
SHOX2O60902 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHOX2O60902 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC18.7■□□□□ 0.58
SHOX2O60902 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHOX2O60902 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHOX2O60902 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SHOX2O60902 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHOX2O60902 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC18.7■□□□□ 0.58
SHOX2O60902 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC18.7■□□□□ 0.58
SHOX2O60902 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHOX2O60902 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC18.7■□□□□ 0.58
SHOX2O60902 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHOX2O60902 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHOX2O60902 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC18.7■□□□□ 0.58
SHOX2O60902 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
SHOX2O60902 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SHOX2O60902 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC18.7■□□□□ 0.58
SHOX2O60902 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SHOX2O60902 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SHOX2O60902 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHOX2O60902 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SHOX2O60902 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC18.7■□□□□ 0.58
SHOX2O60902 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHOX2O60902 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SHOX2O60902 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SHOX2O60902 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.69■□□□□ 0.58
SHOX2O60902 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SHOX2O60902 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.69■□□□□ 0.58
SHOX2O60902 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SHOX2O60902 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHOX2O60902 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHOX2O60902 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHOX2O60902 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC18.69■□□□□ 0.58
SHOX2O60902 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHOX2O60902 MIR638-201ENST00000385237 100 ntBASIC18.69■□□□□ 0.58
SHOX2O60902 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
SHOX2O60902 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
SHOX2O60902 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.69■□□□□ 0.58
SHOX2O60902 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC18.69■□□□□ 0.58
SHOX2O60902 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 57.8 ms