Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLDN3O15551 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC20.41■□□□□ 0.86
CLDN3O15551 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLDN3O15551 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLDN3O15551 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
CLDN3O15551 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLDN3O15551 RNF152P1-201ENST00000397754 604 ntBASIC20.41■□□□□ 0.86
CLDN3O15551 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC20.41■□□□□ 0.86
CLDN3O15551 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC20.41■□□□□ 0.86
CLDN3O15551 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC20.41■□□□□ 0.86
CLDN3O15551 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CLDN3O15551 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLDN3O15551 AC011558.1-201ENST00000623459 338 ntBASIC20.41■□□□□ 0.86
CLDN3O15551 AL023973.1-201ENST00000624619 620 ntBASIC20.41■□□□□ 0.86
CLDN3O15551 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CLDN3O15551 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC20.41■□□□□ 0.86
CLDN3O15551 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
CLDN3O15551 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC20.41■□□□□ 0.86
CLDN3O15551 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC20.41■□□□□ 0.86
CLDN3O15551 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC20.41■□□□□ 0.86
CLDN3O15551 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CLDN3O15551 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC20.41■□□□□ 0.86
CLDN3O15551 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLDN3O15551 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CLDN3O15551 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLDN3O15551 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLDN3O15551 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
CLDN3O15551 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLDN3O15551 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLDN3O15551 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLDN3O15551 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLDN3O15551 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLDN3O15551 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLDN3O15551 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLDN3O15551 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
CLDN3O15551 MIR1224-201ENST00000408193 85 ntBASIC20.4■□□□□ 0.86
CLDN3O15551 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLDN3O15551 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC20.4■□□□□ 0.86
CLDN3O15551 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CLDN3O15551 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CLDN3O15551 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC20.4■□□□□ 0.86
CLDN3O15551 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC20.4■□□□□ 0.86
CLDN3O15551 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC20.4■□□□□ 0.86
CLDN3O15551 NFYC-AS1-201ENST00000606277 1687 ntBASIC20.4■□□□□ 0.86
CLDN3O15551 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
CLDN3O15551 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
CLDN3O15551 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC20.4■□□□□ 0.86
CLDN3O15551 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLDN3O15551 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC20.4■□□□□ 0.86
CLDN3O15551 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLDN3O15551 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLDN3O15551 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC20.39■□□□□ 0.86
CLDN3O15551 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CLDN3O15551 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
CLDN3O15551 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.86
CLDN3O15551 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC20.39■□□□□ 0.86
CLDN3O15551 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC20.39■□□□□ 0.85
CLDN3O15551 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CLDN3O15551 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CLDN3O15551 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CLDN3O15551 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CLDN3O15551 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC20.39■□□□□ 0.85
CLDN3O15551 TSPY5P-201ENST00000426936 936 ntBASIC20.39■□□□□ 0.85
CLDN3O15551 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
CLDN3O15551 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC20.39■□□□□ 0.85
CLDN3O15551 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC20.39■□□□□ 0.85
CLDN3O15551 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC20.39■□□□□ 0.85
CLDN3O15551 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC20.39■□□□□ 0.85
CLDN3O15551 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC20.39■□□□□ 0.85
CLDN3O15551 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC20.39■□□□□ 0.85
CLDN3O15551 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC20.39■□□□□ 0.85
CLDN3O15551 AC093503.3-201ENST00000624917 2352 ntBASIC20.39■□□□□ 0.85
CLDN3O15551 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CLDN3O15551 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC20.39■□□□□ 0.85
CLDN3O15551 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CLDN3O15551 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC20.39■□□□□ 0.85
CLDN3O15551 AL357033.4-201ENST00000617703 1807 ntBASIC20.39■□□□□ 0.85
CLDN3O15551 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CLDN3O15551 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CLDN3O15551 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CLDN3O15551 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
CLDN3O15551 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CLDN3O15551 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC20.38■□□□□ 0.85
CLDN3O15551 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLDN3O15551 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLDN3O15551 MTMR9LP-203ENST00000426597 1545 ntBASIC20.38■□□□□ 0.85
CLDN3O15551 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLDN3O15551 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLDN3O15551 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLDN3O15551 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLDN3O15551 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
CLDN3O15551 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLDN3O15551 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLDN3O15551 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
CLDN3O15551 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC20.38■□□□□ 0.85
CLDN3O15551 ELP6-205ENST00000439305 880 ntTSL 2 BASIC20.38■□□□□ 0.85
CLDN3O15551 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLDN3O15551 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC20.38■□□□□ 0.85
CLDN3O15551 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CLDN3O15551 AL441883.1-201ENST00000566170 1045 ntBASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms