Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC23.5■■□□□ 1.35
NPHP1O15259 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
NPHP1O15259 TSPY19P-201ENST00000418461 509 ntBASIC23.5■■□□□ 1.35
NPHP1O15259 TSPY18P-201ENST00000441642 509 ntBASIC23.5■■□□□ 1.35
NPHP1O15259 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC23.5■■□□□ 1.35
NPHP1O15259 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC23.5■■□□□ 1.35
NPHP1O15259 AC104819.1-201ENST00000504587 486 ntBASIC23.5■■□□□ 1.35
NPHP1O15259 AC012615.1-201ENST00000565797 1299 ntBASIC23.5■■□□□ 1.35
NPHP1O15259 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC23.5■■□□□ 1.35
NPHP1O15259 AL031008.1-201ENST00000619963 541 ntBASIC23.5■■□□□ 1.35
NPHP1O15259 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
NPHP1O15259 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC23.5■■□□□ 1.35
NPHP1O15259 UBC-206ENST00000538617 1303 ntTSL 5 BASIC23.5■■□□□ 1.35
NPHP1O15259 USP39-204ENST00000409766 2033 ntTSL 2 BASIC23.5■■□□□ 1.35
NPHP1O15259 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC23.5■■□□□ 1.35
NPHP1O15259 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
NPHP1O15259 AC112907.3-201ENST00000577781 2400 ntBASIC23.5■■□□□ 1.35
NPHP1O15259 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC23.5■■□□□ 1.35
NPHP1O15259 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC23.49■■□□□ 1.35
NPHP1O15259 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC23.49■■□□□ 1.35
NPHP1O15259 Z82202.1-201ENST00000623446 1880 ntBASIC23.49■■□□□ 1.35
NPHP1O15259 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC23.49■■□□□ 1.35
NPHP1O15259 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
NPHP1O15259 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
NPHP1O15259 RCC2P3-201ENST00000418112 1537 ntBASIC23.49■■□□□ 1.35
NPHP1O15259 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC23.49■■□□□ 1.35
NPHP1O15259 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC23.49■■□□□ 1.35
NPHP1O15259 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC23.49■■□□□ 1.35
NPHP1O15259 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
NPHP1O15259 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
NPHP1O15259 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
NPHP1O15259 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC23.49■■□□□ 1.35
NPHP1O15259 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC23.49■■□□□ 1.35
NPHP1O15259 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC23.49■■□□□ 1.35
NPHP1O15259 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC23.49■■□□□ 1.35
NPHP1O15259 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
NPHP1O15259 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC23.49■■□□□ 1.35
NPHP1O15259 AC138894.3-201ENST00000603787 634 ntBASIC23.49■■□□□ 1.35
NPHP1O15259 IGHV3-41-201ENST00000613121 348 ntBASIC23.49■■□□□ 1.35
NPHP1O15259 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC23.49■■□□□ 1.35
NPHP1O15259 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC23.49■■□□□ 1.35
NPHP1O15259 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC23.49■■□□□ 1.35
NPHP1O15259 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
NPHP1O15259 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC23.48■■□□□ 1.35
NPHP1O15259 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
NPHP1O15259 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
NPHP1O15259 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC23.48■■□□□ 1.35
NPHP1O15259 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
NPHP1O15259 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC23.48■■□□□ 1.35
NPHP1O15259 BAALC-202ENST00000306391 243 ntTSL 5 BASIC23.48■■□□□ 1.35
NPHP1O15259 BAALC-204ENST00000330955 222 ntTSL 5 BASIC23.48■■□□□ 1.35
NPHP1O15259 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC23.48■■□□□ 1.35
NPHP1O15259 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
NPHP1O15259 AC079776.4-201ENST00000511039 504 ntBASIC23.48■■□□□ 1.35
NPHP1O15259 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
NPHP1O15259 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC23.48■■□□□ 1.35
NPHP1O15259 GXYLT1P4-201ENST00000613576 1192 ntBASIC23.48■■□□□ 1.35
NPHP1O15259 LITAF-220ENST00000620789 692 ntTSL 5 BASIC23.48■■□□□ 1.35
NPHP1O15259 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC23.48■■□□□ 1.35
NPHP1O15259 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC23.48■■□□□ 1.35
NPHP1O15259 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
NPHP1O15259 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC23.48■■□□□ 1.35
NPHP1O15259 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC23.48■■□□□ 1.35
NPHP1O15259 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC23.48■■□□□ 1.35
NPHP1O15259 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
NPHP1O15259 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
NPHP1O15259 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
NPHP1O15259 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
NPHP1O15259 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC23.47■■□□□ 1.35
NPHP1O15259 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
NPHP1O15259 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC23.47■■□□□ 1.35
NPHP1O15259 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC23.47■■□□□ 1.35
NPHP1O15259 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC23.47■■□□□ 1.35
NPHP1O15259 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
NPHP1O15259 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC23.47■■□□□ 1.35
NPHP1O15259 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
NPHP1O15259 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC23.47■■□□□ 1.35
NPHP1O15259 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC23.47■■□□□ 1.35
NPHP1O15259 AP003733.1-201ENST00000491725 852 ntBASIC23.47■■□□□ 1.35
NPHP1O15259 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
NPHP1O15259 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
NPHP1O15259 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
NPHP1O15259 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC23.47■■□□□ 1.35
NPHP1O15259 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC23.47■■□□□ 1.35
NPHP1O15259 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC23.47■■□□□ 1.35
NPHP1O15259 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
NPHP1O15259 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC23.47■■□□□ 1.35
NPHP1O15259 AC008556.1-201ENST00000610908 2040 ntBASIC23.47■■□□□ 1.35
NPHP1O15259 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC23.47■■□□□ 1.35
NPHP1O15259 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC23.47■■□□□ 1.35
NPHP1O15259 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
NPHP1O15259 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC23.46■■□□□ 1.35
NPHP1O15259 ENSA-205ENST00000361532 792 ntTSL 2 BASIC23.46■■□□□ 1.35
NPHP1O15259 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
NPHP1O15259 AL022342.1-201ENST00000400363 863 ntBASIC23.46■■□□□ 1.35
NPHP1O15259 KRT18P31-201ENST00000506277 1292 ntBASIC23.46■■□□□ 1.35
NPHP1O15259 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC23.46■■□□□ 1.35
NPHP1O15259 KATNBL1P6-202ENST00000562413 1466 ntBASIC23.46■■□□□ 1.35
NPHP1O15259 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC23.46■■□□□ 1.35
NPHP1O15259 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC23.46■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms