Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
FOXN3O00409 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
FOXN3O00409 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC20.02■□□□□ 0.8
FOXN3O00409 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
FOXN3O00409 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
FOXN3O00409 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
FOXN3O00409 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
FOXN3O00409 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
FOXN3O00409 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
FOXN3O00409 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
FOXN3O00409 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
FOXN3O00409 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC20.02■□□□□ 0.8
FOXN3O00409 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
FOXN3O00409 SNORA78-201ENST00000459373 127 ntBASIC20.02■□□□□ 0.8
FOXN3O00409 MIR4785-201ENST00000585005 73 ntBASIC20.02■□□□□ 0.8
FOXN3O00409 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
FOXN3O00409 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
FOXN3O00409 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
FOXN3O00409 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
FOXN3O00409 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC20.02■□□□□ 0.79
FOXN3O00409 KRT8P45-201ENST00000414328 1447 ntBASIC20.02■□□□□ 0.79
FOXN3O00409 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
FOXN3O00409 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
FOXN3O00409 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
FOXN3O00409 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
FOXN3O00409 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
FOXN3O00409 AC020763.4-201ENST00000623414 4170 ntBASIC20.01■□□□□ 0.79
FOXN3O00409 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
FOXN3O00409 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
FOXN3O00409 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC20.01■□□□□ 0.79
FOXN3O00409 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
FOXN3O00409 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
FOXN3O00409 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC20.01■□□□□ 0.79
FOXN3O00409 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
FOXN3O00409 UNC93B2-201ENST00000285383 730 ntBASIC20.01■□□□□ 0.79
FOXN3O00409 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
FOXN3O00409 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
FOXN3O00409 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
FOXN3O00409 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
FOXN3O00409 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
FOXN3O00409 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC20.01■□□□□ 0.79
FOXN3O00409 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC20.01■□□□□ 0.79
FOXN3O00409 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC20.01■□□□□ 0.79
FOXN3O00409 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC20.01■□□□□ 0.79
FOXN3O00409 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC20.01■□□□□ 0.79
FOXN3O00409 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
FOXN3O00409 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
FOXN3O00409 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
FOXN3O00409 AC112777.1-201ENST00000540175 1423 ntBASIC20.01■□□□□ 0.79
FOXN3O00409 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC20■□□□□ 0.79
FOXN3O00409 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
FOXN3O00409 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
FOXN3O00409 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
FOXN3O00409 MADD-208ENST00000405573 1823 ntTSL 5 BASIC20■□□□□ 0.79
FOXN3O00409 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
FOXN3O00409 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
FOXN3O00409 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
FOXN3O00409 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
FOXN3O00409 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC20■□□□□ 0.79
FOXN3O00409 ENSA-205ENST00000361532 792 ntTSL 2 BASIC20■□□□□ 0.79
FOXN3O00409 MIR564-202ENST00000385049 94 ntBASIC20■□□□□ 0.79
FOXN3O00409 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC20■□□□□ 0.79
FOXN3O00409 DHDH-203ENST00000522614 776 ntTSL 5 BASIC20■□□□□ 0.79
FOXN3O00409 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
FOXN3O00409 AP000525.1-201ENST00000608286 694 ntBASIC20■□□□□ 0.79
FOXN3O00409 AL023803.3-201ENST00000615559 522 ntBASIC20■□□□□ 0.79
FOXN3O00409 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
FOXN3O00409 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
FOXN3O00409 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC20■□□□□ 0.79
FOXN3O00409 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
FOXN3O00409 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC20■□□□□ 0.79
FOXN3O00409 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC20■□□□□ 0.79
FOXN3O00409 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC20■□□□□ 0.79
FOXN3O00409 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
FOXN3O00409 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC20■□□□□ 0.79
FOXN3O00409 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
FOXN3O00409 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
FOXN3O00409 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC20■□□□□ 0.79
FOXN3O00409 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC20■□□□□ 0.79
FOXN3O00409 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
FOXN3O00409 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
FOXN3O00409 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC20■□□□□ 0.79
FOXN3O00409 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC20■□□□□ 0.79
FOXN3O00409 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
FOXN3O00409 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
FOXN3O00409 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC19.99■□□□□ 0.79
FOXN3O00409 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
FOXN3O00409 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC19.99■□□□□ 0.79
FOXN3O00409 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
FOXN3O00409 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
FOXN3O00409 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC19.99■□□□□ 0.79
FOXN3O00409 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC19.99■□□□□ 0.79
FOXN3O00409 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
FOXN3O00409 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC19.99■□□□□ 0.79
FOXN3O00409 AL390955.1-201ENST00000428694 934 ntBASIC19.99■□□□□ 0.79
FOXN3O00409 TSPY15P-201ENST00000457163 923 ntBASIC19.99■□□□□ 0.79
FOXN3O00409 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
FOXN3O00409 AL355075.4-201ENST00000554988 638 ntBASIC19.99■□□□□ 0.79
FOXN3O00409 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
FOXN3O00409 MIR4674-201ENST00000582457 87 ntBASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms