Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL6A5A8TX70 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC14.47□□□□□ -0.09
COL6A5A8TX70 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL6A5A8TX70 TSEN15P1-201ENST00000423257 515 ntBASIC14.46□□□□□ -0.09
COL6A5A8TX70 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC14.46□□□□□ -0.09
COL6A5A8TX70 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC14.46□□□□□ -0.09
COL6A5A8TX70 RNF34-208ENST00000555076 593 ntTSL 3 BASIC14.46□□□□□ -0.09
COL6A5A8TX70 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL6A5A8TX70 KRT8P7-201ENST00000533003 1432 ntBASIC14.46□□□□□ -0.09
COL6A5A8TX70 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL6A5A8TX70 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC14.46□□□□□ -0.09
COL6A5A8TX70 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL6A5A8TX70 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC14.46□□□□□ -0.09
COL6A5A8TX70 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC14.46□□□□□ -0.09
COL6A5A8TX70 MKNK2P1-201ENST00000437526 628 ntBASIC14.46□□□□□ -0.09
COL6A5A8TX70 MSRA-206ENST00000521209 814 ntTSL 3 BASIC14.46□□□□□ -0.09
COL6A5A8TX70 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC14.46□□□□□ -0.09
COL6A5A8TX70 AC092865.6-201ENST00000642101 219 ntBASIC14.46□□□□□ -0.09
COL6A5A8TX70 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL6A5A8TX70 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
COL6A5A8TX70 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
COL6A5A8TX70 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
COL6A5A8TX70 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL6A5A8TX70 CD99-202ENST00000381180 530 ntTSL 2 BASIC14.45□□□□□ -0.1
COL6A5A8TX70 CENPM-204ENST00000402420 688 ntTSL 5 BASIC14.45□□□□□ -0.1
COL6A5A8TX70 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC14.45□□□□□ -0.1
COL6A5A8TX70 ABCD1P5-201ENST00000445663 754 ntBASIC14.45□□□□□ -0.1
COL6A5A8TX70 COX5A-206ENST00000568783 571 ntTSL 3 BASIC14.45□□□□□ -0.1
COL6A5A8TX70 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
COL6A5A8TX70 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL6A5A8TX70 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
COL6A5A8TX70 KRT89P-201ENST00000620027 1478 ntBASIC14.45□□□□□ -0.1
COL6A5A8TX70 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL6A5A8TX70 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC14.45□□□□□ -0.1
COL6A5A8TX70 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL6A5A8TX70 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
COL6A5A8TX70 CD82-202ENST00000342935 967 ntTSL 5 BASIC14.45□□□□□ -0.1
COL6A5A8TX70 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
COL6A5A8TX70 AC092910.1-201ENST00000482027 1129 ntBASIC14.45□□□□□ -0.1
COL6A5A8TX70 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC14.45□□□□□ -0.1
COL6A5A8TX70 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL6A5A8TX70 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC14.45□□□□□ -0.1
COL6A5A8TX70 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
COL6A5A8TX70 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC14.45□□□□□ -0.1
COL6A5A8TX70 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL6A5A8TX70 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
COL6A5A8TX70 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
COL6A5A8TX70 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL6A5A8TX70 KIRREL3-AS3-201ENST00000404882 831 ntBASIC14.45□□□□□ -0.1
COL6A5A8TX70 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC14.45□□□□□ -0.1
COL6A5A8TX70 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC14.45□□□□□ -0.1
COL6A5A8TX70 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL6A5A8TX70 AC104390.1-201ENST00000555663 520 ntBASIC14.45□□□□□ -0.1
COL6A5A8TX70 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
COL6A5A8TX70 AL513190.1-201ENST00000621254 727 ntBASIC14.45□□□□□ -0.1
COL6A5A8TX70 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A5A8TX70 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A5A8TX70 MYB-221ENST00000527615 2381 ntTSL 5 BASIC14.44□□□□□ -0.1
COL6A5A8TX70 ELL2P1-201ENST00000413990 1906 ntBASIC14.44□□□□□ -0.1
COL6A5A8TX70 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC14.44□□□□□ -0.1
COL6A5A8TX70 AIRN-201ENST00000601203 4374 ntBASIC14.44□□□□□ -0.1
COL6A5A8TX70 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
COL6A5A8TX70 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A5A8TX70 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A5A8TX70 RBSN-204ENST00000449050 903 ntTSL 2 BASIC14.44□□□□□ -0.1
COL6A5A8TX70 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC14.44□□□□□ -0.1
COL6A5A8TX70 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A5A8TX70 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC14.44□□□□□ -0.1
COL6A5A8TX70 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A5A8TX70 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A5A8TX70 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A5A8TX70 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A5A8TX70 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A5A8TX70 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A5A8TX70 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC14.44□□□□□ -0.1
COL6A5A8TX70 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A5A8TX70 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A5A8TX70 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A5A8TX70 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A5A8TX70 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A5A8TX70 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A5A8TX70 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A5A8TX70 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC14.44□□□□□ -0.1
COL6A5A8TX70 TAF8-206ENST00000472818 719 ntTSL 2 BASIC14.44□□□□□ -0.1
COL6A5A8TX70 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A5A8TX70 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC14.44□□□□□ -0.1
COL6A5A8TX70 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A5A8TX70 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A5A8TX70 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC14.44□□□□□ -0.1
COL6A5A8TX70 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL6A5A8TX70 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL6A5A8TX70 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
COL6A5A8TX70 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC14.43□□□□□ -0.1
COL6A5A8TX70 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL6A5A8TX70 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL6A5A8TX70 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL6A5A8TX70 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL6A5A8TX70 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL6A5A8TX70 RCN1P2-201ENST00000398357 915 ntBASIC14.43□□□□□ -0.1
COL6A5A8TX70 DDT-206ENST00000430101 573 ntTSL 2 BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms