Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A6A6NMZ7 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A6A6NMZ7 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A6A6NMZ7 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A6A6NMZ7 AC023274.1-201ENST00000418278 595 ntBASIC16.8■□□□□ 0.28
COL6A6A6NMZ7 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC16.8■□□□□ 0.28
COL6A6A6NMZ7 AC011467.4-201ENST00000594891 528 ntBASIC16.8■□□□□ 0.28
COL6A6A6NMZ7 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
COL6A6A6NMZ7 AL353692.3-201ENST00000407031 1396 ntBASIC16.8■□□□□ 0.28
COL6A6A6NMZ7 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A6A6NMZ7 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A6A6NMZ7 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC16.8■□□□□ 0.28
COL6A6A6NMZ7 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A6A6NMZ7 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A6A6NMZ7 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A6A6NMZ7 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A6A6NMZ7 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A6A6NMZ7 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
COL6A6A6NMZ7 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A6A6NMZ7 DDT-203ENST00000403754 569 ntTSL 3 BASIC16.8■□□□□ 0.28
COL6A6A6NMZ7 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
COL6A6A6NMZ7 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC16.8■□□□□ 0.28
COL6A6A6NMZ7 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC16.8■□□□□ 0.28
COL6A6A6NMZ7 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.8■□□□□ 0.28
COL6A6A6NMZ7 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC16.8■□□□□ 0.28
COL6A6A6NMZ7 MTDHP5-201ENST00000598980 586 ntBASIC16.8■□□□□ 0.28
COL6A6A6NMZ7 AL596442.2-201ENST00000610240 980 ntBASIC16.8■□□□□ 0.28
COL6A6A6NMZ7 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A6A6NMZ7 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
COL6A6A6NMZ7 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 PMP22-202ENST00000395936 816 ntTSL 3 BASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 COX20P2-201ENST00000452636 358 ntBASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 HS6ST1P1-201ENST00000481504 1234 ntBASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 AP001269.4-201ENST00000609611 512 ntBASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 MIR5100-201ENST00000579544 119 ntBASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC16.79■□□□□ 0.28
COL6A6A6NMZ7 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A6A6NMZ7 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A6A6NMZ7 ZNF815P-204ENST00000434898 1737 ntBASIC16.78■□□□□ 0.28
COL6A6A6NMZ7 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC16.78■□□□□ 0.28
COL6A6A6NMZ7 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A6A6NMZ7 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A6A6NMZ7 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC16.78■□□□□ 0.28
COL6A6A6NMZ7 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
COL6A6A6NMZ7 FGFR3P6-201ENST00000457012 610 ntBASIC16.78■□□□□ 0.28
COL6A6A6NMZ7 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC16.78■□□□□ 0.28
COL6A6A6NMZ7 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.78■□□□□ 0.28
COL6A6A6NMZ7 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
COL6A6A6NMZ7 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC16.78■□□□□ 0.28
COL6A6A6NMZ7 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A6A6NMZ7 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A6A6NMZ7 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
COL6A6A6NMZ7 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC16.78■□□□□ 0.28
COL6A6A6NMZ7 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A6A6NMZ7 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
COL6A6A6NMZ7 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC16.78■□□□□ 0.28
COL6A6A6NMZ7 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A6A6NMZ7 DET1-207ENST00000564406 2315 ntTSL 2 BASIC16.77■□□□□ 0.28
COL6A6A6NMZ7 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A6A6NMZ7 AC132008.2-207ENST00000454517 770 ntBASIC16.77■□□□□ 0.28
COL6A6A6NMZ7 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC16.77■□□□□ 0.28
COL6A6A6NMZ7 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC16.77■□□□□ 0.28
COL6A6A6NMZ7 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC16.77■□□□□ 0.28
COL6A6A6NMZ7 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A6A6NMZ7 KRT18P28-201ENST00000453838 1332 ntBASIC16.77■□□□□ 0.28
COL6A6A6NMZ7 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
COL6A6A6NMZ7 TREX1-205ENST00000625293 1783 ntBASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms