Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 AC024563.2-201ENST00000603282 481 ntBASIC28.31■■■□□ 2.12
COL17A1Q9UMD9 AL596442.2-201ENST00000610240 980 ntBASIC28.31■■■□□ 2.12
COL17A1Q9UMD9 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
COL17A1Q9UMD9 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC28.31■■■□□ 2.12
COL17A1Q9UMD9 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
COL17A1Q9UMD9 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC28.31■■■□□ 2.12
COL17A1Q9UMD9 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC28.3■■■□□ 2.12
COL17A1Q9UMD9 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
COL17A1Q9UMD9 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC28.3■■■□□ 2.12
COL17A1Q9UMD9 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC28.3■■■□□ 2.12
COL17A1Q9UMD9 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
COL17A1Q9UMD9 RPS2P28-201ENST00000314255 741 ntBASIC28.3■■■□□ 2.12
COL17A1Q9UMD9 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
COL17A1Q9UMD9 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
COL17A1Q9UMD9 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC28.3■■■□□ 2.12
COL17A1Q9UMD9 AC002347.1-201ENST00000569543 541 ntBASIC28.3■■■□□ 2.12
COL17A1Q9UMD9 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC28.3■■■□□ 2.12
COL17A1Q9UMD9 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC28.3■■■□□ 2.12
COL17A1Q9UMD9 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
COL17A1Q9UMD9 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
COL17A1Q9UMD9 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC28.3■■■□□ 2.12
COL17A1Q9UMD9 GOLGA2P11-201ENST00000562660 1621 ntBASIC28.3■■■□□ 2.12
COL17A1Q9UMD9 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
COL17A1Q9UMD9 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
COL17A1Q9UMD9 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC28.29■■■□□ 2.12
COL17A1Q9UMD9 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
COL17A1Q9UMD9 AC007967.2-201ENST00000432613 625 ntBASIC28.29■■■□□ 2.12
COL17A1Q9UMD9 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
COL17A1Q9UMD9 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC28.29■■■□□ 2.12
COL17A1Q9UMD9 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
COL17A1Q9UMD9 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC28.29■■■□□ 2.12
COL17A1Q9UMD9 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC28.29■■■□□ 2.12
COL17A1Q9UMD9 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
COL17A1Q9UMD9 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC28.29■■■□□ 2.12
COL17A1Q9UMD9 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
COL17A1Q9UMD9 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
COL17A1Q9UMD9 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC28.28■■■□□ 2.12
COL17A1Q9UMD9 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC28.28■■■□□ 2.12
COL17A1Q9UMD9 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC28.28■■■□□ 2.12
COL17A1Q9UMD9 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC28.28■■■□□ 2.12
COL17A1Q9UMD9 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
COL17A1Q9UMD9 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC28.28■■■□□ 2.12
COL17A1Q9UMD9 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC28.28■■■□□ 2.12
COL17A1Q9UMD9 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
COL17A1Q9UMD9 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC28.27■■■□□ 2.12
COL17A1Q9UMD9 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC28.27■■■□□ 2.12
COL17A1Q9UMD9 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
COL17A1Q9UMD9 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC28.27■■■□□ 2.12
COL17A1Q9UMD9 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC28.27■■■□□ 2.12
COL17A1Q9UMD9 AC023274.1-201ENST00000418278 595 ntBASIC28.27■■■□□ 2.12
COL17A1Q9UMD9 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC28.27■■■□□ 2.12
COL17A1Q9UMD9 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC28.27■■■□□ 2.12
COL17A1Q9UMD9 SPCS2P1-201ENST00000561636 679 ntBASIC28.27■■■□□ 2.12
COL17A1Q9UMD9 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
COL17A1Q9UMD9 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC28.27■■■□□ 2.12
COL17A1Q9UMD9 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC28.27■■■□□ 2.12
COL17A1Q9UMD9 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC28.27■■■□□ 2.12
COL17A1Q9UMD9 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC28.27■■■□□ 2.12
COL17A1Q9UMD9 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC28.27■■■□□ 2.12
COL17A1Q9UMD9 YBX1P5-201ENST00000509441 847 ntBASIC28.27■■■□□ 2.12
COL17A1Q9UMD9 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC28.27■■■□□ 2.12
COL17A1Q9UMD9 GZMM-202ENST00000592501 941 ntTSL 3 BASIC28.27■■■□□ 2.12
COL17A1Q9UMD9 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC28.27■■■□□ 2.12
COL17A1Q9UMD9 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
COL17A1Q9UMD9 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC28.26■■■□□ 2.12
COL17A1Q9UMD9 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.12
COL17A1Q9UMD9 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC28.26■■■□□ 2.12
COL17A1Q9UMD9 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
COL17A1Q9UMD9 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
COL17A1Q9UMD9 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
COL17A1Q9UMD9 PON3-203ENST00000427422 894 ntTSL 3 BASIC28.26■■■□□ 2.11
COL17A1Q9UMD9 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
COL17A1Q9UMD9 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC28.26■■■□□ 2.11
COL17A1Q9UMD9 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC28.26■■■□□ 2.11
COL17A1Q9UMD9 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC28.26■■■□□ 2.11
COL17A1Q9UMD9 AC025062.2-201ENST00000605477 670 ntBASIC28.26■■■□□ 2.11
COL17A1Q9UMD9 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC28.26■■■□□ 2.11
COL17A1Q9UMD9 ORC5-208ENST00000626700 344 ntTSL 3 BASIC28.26■■■□□ 2.11
COL17A1Q9UMD9 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC28.26■■■□□ 2.11
COL17A1Q9UMD9 HLA-J-201ENST00000462773 1622 ntBASIC28.25■■■□□ 2.11
COL17A1Q9UMD9 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC28.25■■■□□ 2.11
COL17A1Q9UMD9 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
COL17A1Q9UMD9 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
COL17A1Q9UMD9 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
COL17A1Q9UMD9 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC28.25■■■□□ 2.11
COL17A1Q9UMD9 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC28.25■■■□□ 2.11
COL17A1Q9UMD9 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
COL17A1Q9UMD9 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
COL17A1Q9UMD9 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC28.25■■■□□ 2.11
COL17A1Q9UMD9 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC28.25■■■□□ 2.11
COL17A1Q9UMD9 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC28.25■■■□□ 2.11
COL17A1Q9UMD9 PNMT-203ENST00000581428 677 ntTSL 2 BASIC28.25■■■□□ 2.11
COL17A1Q9UMD9 MIR1199-201ENST00000621445 119 ntBASIC28.25■■■□□ 2.11
COL17A1Q9UMD9 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC28.25■■■□□ 2.11
COL17A1Q9UMD9 AL109659.2-201ENST00000606809 1674 ntBASIC28.25■■■□□ 2.11
COL17A1Q9UMD9 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC28.25■■■□□ 2.11
COL17A1Q9UMD9 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC28.24■■■□□ 2.11
COL17A1Q9UMD9 KRT89P-201ENST00000620027 1478 ntBASIC28.24■■■□□ 2.11
COL17A1Q9UMD9 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
COL17A1Q9UMD9 SDHAP1-207ENST00000440850 2000 ntBASIC28.24■■■□□ 2.11
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms