Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LRFN1Q9P244 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LRFN1Q9P244 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
LRFN1Q9P244 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LRFN1Q9P244 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC17.18■□□□□ 0.34
LRFN1Q9P244 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
LRFN1Q9P244 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
LRFN1Q9P244 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC17.17■□□□□ 0.34
LRFN1Q9P244 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
LRFN1Q9P244 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LRFN1Q9P244 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LRFN1Q9P244 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.17■□□□□ 0.34
LRFN1Q9P244 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
LRFN1Q9P244 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LRFN1Q9P244 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LRFN1Q9P244 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.17■□□□□ 0.34
LRFN1Q9P244 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LRFN1Q9P244 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC17.17■□□□□ 0.34
LRFN1Q9P244 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
LRFN1Q9P244 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC17.17■□□□□ 0.34
LRFN1Q9P244 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
LRFN1Q9P244 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
LRFN1Q9P244 HYMAI.1-201ENST00000620949 238 ntBASIC17.17■□□□□ 0.34
LRFN1Q9P244 AL032819.2-201ENST00000624543 2162 ntBASIC17.17■□□□□ 0.34
LRFN1Q9P244 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LRFN1Q9P244 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
LRFN1Q9P244 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
LRFN1Q9P244 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
LRFN1Q9P244 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LRFN1Q9P244 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC17.16■□□□□ 0.34
LRFN1Q9P244 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LRFN1Q9P244 AC093484.2-201ENST00000580996 2166 ntBASIC17.16■□□□□ 0.34
LRFN1Q9P244 AC007952.6-201ENST00000573168 2673 ntBASIC17.16■□□□□ 0.34
LRFN1Q9P244 AC003957.1-201ENST00000625108 2673 ntBASIC17.16■□□□□ 0.34
LRFN1Q9P244 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LRFN1Q9P244 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC17.16■□□□□ 0.34
LRFN1Q9P244 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC17.16■□□□□ 0.34
LRFN1Q9P244 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC17.16■□□□□ 0.34
LRFN1Q9P244 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LRFN1Q9P244 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
LRFN1Q9P244 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC17.16■□□□□ 0.34
LRFN1Q9P244 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC17.16■□□□□ 0.34
LRFN1Q9P244 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LRFN1Q9P244 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC17.16■□□□□ 0.34
LRFN1Q9P244 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LRFN1Q9P244 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LRFN1Q9P244 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC17.16■□□□□ 0.34
LRFN1Q9P244 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
LRFN1Q9P244 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LRFN1Q9P244 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LRFN1Q9P244 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC17.16■□□□□ 0.34
LRFN1Q9P244 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
LRFN1Q9P244 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
LRFN1Q9P244 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
LRFN1Q9P244 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LRFN1Q9P244 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
LRFN1Q9P244 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LRFN1Q9P244 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LRFN1Q9P244 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
LRFN1Q9P244 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LRFN1Q9P244 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LRFN1Q9P244 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LRFN1Q9P244 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LRFN1Q9P244 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LRFN1Q9P244 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC17.15■□□□□ 0.34
LRFN1Q9P244 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LRFN1Q9P244 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
LRFN1Q9P244 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC17.15■□□□□ 0.34
LRFN1Q9P244 AC116407.4-201ENST00000623319 1061 ntBASIC17.15■□□□□ 0.34
LRFN1Q9P244 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LRFN1Q9P244 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LRFN1Q9P244 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LRFN1Q9P244 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LRFN1Q9P244 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
LRFN1Q9P244 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LRFN1Q9P244 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
LRFN1Q9P244 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC17.15■□□□□ 0.34
LRFN1Q9P244 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
LRFN1Q9P244 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC17.14■□□□□ 0.33
LRFN1Q9P244 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
LRFN1Q9P244 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
LRFN1Q9P244 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
LRFN1Q9P244 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC17.14■□□□□ 0.33
LRFN1Q9P244 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
LRFN1Q9P244 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
LRFN1Q9P244 KRT8P32-201ENST00000512863 1461 ntBASIC17.14■□□□□ 0.33
LRFN1Q9P244 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
LRFN1Q9P244 HBZP1-201ENST00000354915 429 ntBASIC17.14■□□□□ 0.33
LRFN1Q9P244 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LRFN1Q9P244 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC17.14■□□□□ 0.33
LRFN1Q9P244 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.14■□□□□ 0.33
LRFN1Q9P244 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC17.14■□□□□ 0.33
LRFN1Q9P244 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC17.14■□□□□ 0.33
LRFN1Q9P244 SEC1P-202ENST00000473944 940 ntBASIC17.14■□□□□ 0.33
LRFN1Q9P244 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.14■□□□□ 0.33
LRFN1Q9P244 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LRFN1Q9P244 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC17.14■□□□□ 0.33
LRFN1Q9P244 CLN6-214ENST00000636314 442 ntTSL 3 BASIC17.14■□□□□ 0.33
LRFN1Q9P244 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LRFN1Q9P244 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 96.5 ms