Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
MKS1Q9NXB0 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC18.5■□□□□ 0.55
MKS1Q9NXB0 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC18.5■□□□□ 0.55
MKS1Q9NXB0 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC18.5■□□□□ 0.55
MKS1Q9NXB0 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC18.5■□□□□ 0.55
MKS1Q9NXB0 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
MKS1Q9NXB0 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
MKS1Q9NXB0 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
MKS1Q9NXB0 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
MKS1Q9NXB0 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
MKS1Q9NXB0 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
MKS1Q9NXB0 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
MKS1Q9NXB0 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
MKS1Q9NXB0 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.5■□□□□ 0.55
MKS1Q9NXB0 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
MKS1Q9NXB0 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
MKS1Q9NXB0 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
MKS1Q9NXB0 HTR7P1-201ENST00000538670 1336 ntBASIC18.49■□□□□ 0.55
MKS1Q9NXB0 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.49■□□□□ 0.55
MKS1Q9NXB0 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
MKS1Q9NXB0 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
MKS1Q9NXB0 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
MKS1Q9NXB0 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.49■□□□□ 0.55
MKS1Q9NXB0 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.49■□□□□ 0.55
MKS1Q9NXB0 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MKS1Q9NXB0 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
MKS1Q9NXB0 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MKS1Q9NXB0 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
MKS1Q9NXB0 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.49■□□□□ 0.55
MKS1Q9NXB0 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.49■□□□□ 0.55
MKS1Q9NXB0 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MKS1Q9NXB0 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MKS1Q9NXB0 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
MKS1Q9NXB0 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC18.49■□□□□ 0.55
MKS1Q9NXB0 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC18.49■□□□□ 0.55
MKS1Q9NXB0 AL445675.2-201ENST00000620291 557 ntBASIC18.49■□□□□ 0.55
MKS1Q9NXB0 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MKS1Q9NXB0 MYLKP1-201ENST00000509077 1580 ntBASIC18.49■□□□□ 0.55
MKS1Q9NXB0 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MKS1Q9NXB0 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.49■□□□□ 0.55
MKS1Q9NXB0 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
MKS1Q9NXB0 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MKS1Q9NXB0 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
MKS1Q9NXB0 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
MKS1Q9NXB0 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
MKS1Q9NXB0 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.48■□□□□ 0.55
MKS1Q9NXB0 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MKS1Q9NXB0 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MKS1Q9NXB0 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.48■□□□□ 0.55
MKS1Q9NXB0 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MKS1Q9NXB0 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MKS1Q9NXB0 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MKS1Q9NXB0 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MKS1Q9NXB0 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
MKS1Q9NXB0 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MKS1Q9NXB0 GLI3-203ENST00000437480 451 ntTSL 2 BASIC18.48■□□□□ 0.55
MKS1Q9NXB0 MAP2K4P1-201ENST00000438453 1195 ntBASIC18.48■□□□□ 0.55
MKS1Q9NXB0 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC18.48■□□□□ 0.55
MKS1Q9NXB0 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC18.48■□□□□ 0.55
MKS1Q9NXB0 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.48■□□□□ 0.55
MKS1Q9NXB0 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.48■□□□□ 0.55
MKS1Q9NXB0 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MKS1Q9NXB0 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
MKS1Q9NXB0 GAMT-205ENST00000640762 751 ntTSL 5 BASIC18.48■□□□□ 0.55
MKS1Q9NXB0 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
MKS1Q9NXB0 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
MKS1Q9NXB0 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
MKS1Q9NXB0 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.48■□□□□ 0.55
MKS1Q9NXB0 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
MKS1Q9NXB0 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC18.48■□□□□ 0.55
MKS1Q9NXB0 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MKS1Q9NXB0 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC18.48■□□□□ 0.55
MKS1Q9NXB0 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MKS1Q9NXB0 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC18.47■□□□□ 0.55
MKS1Q9NXB0 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MKS1Q9NXB0 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
MKS1Q9NXB0 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MKS1Q9NXB0 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MKS1Q9NXB0 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MKS1Q9NXB0 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
MKS1Q9NXB0 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
MKS1Q9NXB0 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MKS1Q9NXB0 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
MKS1Q9NXB0 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MKS1Q9NXB0 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MKS1Q9NXB0 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
MKS1Q9NXB0 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
MKS1Q9NXB0 PARL-206ENST00000435888 1098 ntTSL 5 BASIC18.47■□□□□ 0.55
MKS1Q9NXB0 AC069152.1-201ENST00000438030 544 ntBASIC18.47■□□□□ 0.55
MKS1Q9NXB0 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
MKS1Q9NXB0 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
MKS1Q9NXB0 UNC93B5-201ENST00000530315 699 ntBASIC18.47■□□□□ 0.55
MKS1Q9NXB0 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
MKS1Q9NXB0 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.47■□□□□ 0.55
MKS1Q9NXB0 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
MKS1Q9NXB0 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
MKS1Q9NXB0 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC18.47■□□□□ 0.55
MKS1Q9NXB0 AC133041.1-202ENST00000642053 222 ntBASIC18.47■□□□□ 0.55
MKS1Q9NXB0 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MKS1Q9NXB0 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms