Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.26■□□□□ 0.67
TDP1Q9NUW8 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TDP1Q9NUW8 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC19.26■□□□□ 0.67
TDP1Q9NUW8 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TDP1Q9NUW8 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TDP1Q9NUW8 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TDP1Q9NUW8 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC19.26■□□□□ 0.67
TDP1Q9NUW8 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
TDP1Q9NUW8 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TDP1Q9NUW8 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TDP1Q9NUW8 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TDP1Q9NUW8 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TDP1Q9NUW8 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TDP1Q9NUW8 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TDP1Q9NUW8 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC19.26■□□□□ 0.67
TDP1Q9NUW8 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TDP1Q9NUW8 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
TDP1Q9NUW8 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
TDP1Q9NUW8 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
TDP1Q9NUW8 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
TDP1Q9NUW8 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TDP1Q9NUW8 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC19.25■□□□□ 0.67
TDP1Q9NUW8 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TDP1Q9NUW8 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.25■□□□□ 0.67
TDP1Q9NUW8 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TDP1Q9NUW8 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.25■□□□□ 0.67
TDP1Q9NUW8 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
TDP1Q9NUW8 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TDP1Q9NUW8 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TDP1Q9NUW8 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TDP1Q9NUW8 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC19.25■□□□□ 0.67
TDP1Q9NUW8 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TDP1Q9NUW8 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC19.25■□□□□ 0.67
TDP1Q9NUW8 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC19.25■□□□□ 0.67
TDP1Q9NUW8 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC19.25■□□□□ 0.67
TDP1Q9NUW8 IL11-204ENST00000590625 1028 ntTSL 2 BASIC19.25■□□□□ 0.67
TDP1Q9NUW8 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
TDP1Q9NUW8 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC19.25■□□□□ 0.67
TDP1Q9NUW8 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TDP1Q9NUW8 AFG3L1P-217ENST00000557444 2447 ntBASIC19.25■□□□□ 0.67
TDP1Q9NUW8 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
TDP1Q9NUW8 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.25■□□□□ 0.67
TDP1Q9NUW8 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TDP1Q9NUW8 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TDP1Q9NUW8 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TDP1Q9NUW8 CYP51A1P1-201ENST00000492267 1507 ntBASIC19.25■□□□□ 0.67
TDP1Q9NUW8 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
TDP1Q9NUW8 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TDP1Q9NUW8 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TDP1Q9NUW8 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TDP1Q9NUW8 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TDP1Q9NUW8 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
TDP1Q9NUW8 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.24■□□□□ 0.67
TDP1Q9NUW8 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.24■□□□□ 0.67
TDP1Q9NUW8 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TDP1Q9NUW8 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC19.24■□□□□ 0.67
TDP1Q9NUW8 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC19.24■□□□□ 0.67
TDP1Q9NUW8 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TDP1Q9NUW8 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
TDP1Q9NUW8 SDHD-206ENST00000528182 754 ntTSL 3 BASIC19.24■□□□□ 0.67
TDP1Q9NUW8 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC19.24■□□□□ 0.67
TDP1Q9NUW8 NAT14-202ENST00000587400 416 ntTSL 5 BASIC19.24■□□□□ 0.67
TDP1Q9NUW8 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TDP1Q9NUW8 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
TDP1Q9NUW8 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC19.24■□□□□ 0.67
TDP1Q9NUW8 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TDP1Q9NUW8 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TDP1Q9NUW8 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TDP1Q9NUW8 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
TDP1Q9NUW8 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TDP1Q9NUW8 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC19.24■□□□□ 0.67
TDP1Q9NUW8 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TDP1Q9NUW8 KRT18P1-202ENST00000452408 1331 ntBASIC19.24■□□□□ 0.67
TDP1Q9NUW8 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TDP1Q9NUW8 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TDP1Q9NUW8 AC093484.2-201ENST00000580996 2166 ntBASIC19.23■□□□□ 0.67
TDP1Q9NUW8 PBK-203ENST00000522944 1499 ntTSL 2 BASIC19.23■□□□□ 0.67
TDP1Q9NUW8 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
TDP1Q9NUW8 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.23■□□□□ 0.67
TDP1Q9NUW8 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TDP1Q9NUW8 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TDP1Q9NUW8 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
TDP1Q9NUW8 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TDP1Q9NUW8 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC19.23■□□□□ 0.67
TDP1Q9NUW8 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TDP1Q9NUW8 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC19.23■□□□□ 0.67
TDP1Q9NUW8 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
TDP1Q9NUW8 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
TDP1Q9NUW8 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TDP1Q9NUW8 BAALC-202ENST00000306391 243 ntTSL 5 BASIC19.23■□□□□ 0.67
TDP1Q9NUW8 BAALC-204ENST00000330955 222 ntTSL 5 BASIC19.23■□□□□ 0.67
TDP1Q9NUW8 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TDP1Q9NUW8 PPIH-202ENST00000372549 327 ntTSL 3 BASIC19.23■□□□□ 0.67
TDP1Q9NUW8 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TDP1Q9NUW8 AC026396.1-201ENST00000419388 421 ntBASIC19.23■□□□□ 0.67
TDP1Q9NUW8 SKP2-204ENST00000508514 821 ntTSL 3 BASIC19.23■□□□□ 0.67
TDP1Q9NUW8 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC19.23■□□□□ 0.67
TDP1Q9NUW8 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
TDP1Q9NUW8 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC19.23■□□□□ 0.67
TDP1Q9NUW8 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms