Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LRCH3Q96II8 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LRCH3Q96II8 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LRCH3Q96II8 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LRCH3Q96II8 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LRCH3Q96II8 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LRCH3Q96II8 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC20.23■□□□□ 0.83
LRCH3Q96II8 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC20.23■□□□□ 0.83
LRCH3Q96II8 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC20.23■□□□□ 0.83
LRCH3Q96II8 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LRCH3Q96II8 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LRCH3Q96II8 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC20.23■□□□□ 0.83
LRCH3Q96II8 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC20.23■□□□□ 0.83
LRCH3Q96II8 AC040169.1-201ENST00000565382 521 ntBASIC20.23■□□□□ 0.83
LRCH3Q96II8 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
LRCH3Q96II8 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LRCH3Q96II8 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LRCH3Q96II8 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LRCH3Q96II8 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LRCH3Q96II8 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LRCH3Q96II8 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LRCH3Q96II8 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LRCH3Q96II8 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
LRCH3Q96II8 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
LRCH3Q96II8 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC20.22■□□□□ 0.83
LRCH3Q96II8 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
LRCH3Q96II8 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
LRCH3Q96II8 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
LRCH3Q96II8 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
LRCH3Q96II8 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
LRCH3Q96II8 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
LRCH3Q96II8 PMP22-202ENST00000395936 816 ntTSL 3 BASIC20.22■□□□□ 0.83
LRCH3Q96II8 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC20.22■□□□□ 0.83
LRCH3Q96II8 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LRCH3Q96II8 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC20.22■□□□□ 0.83
LRCH3Q96II8 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC20.22■□□□□ 0.83
LRCH3Q96II8 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
LRCH3Q96II8 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LRCH3Q96II8 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LRCH3Q96II8 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.22■□□□□ 0.83
LRCH3Q96II8 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
LRCH3Q96II8 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
LRCH3Q96II8 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
LRCH3Q96II8 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
LRCH3Q96II8 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.22■□□□□ 0.83
LRCH3Q96II8 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC20.21■□□□□ 0.83
LRCH3Q96II8 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LRCH3Q96II8 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
LRCH3Q96II8 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LRCH3Q96II8 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
LRCH3Q96II8 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LRCH3Q96II8 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LRCH3Q96II8 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LRCH3Q96II8 AC211486.1-202ENST00000416371 468 ntBASIC20.21■□□□□ 0.83
LRCH3Q96II8 VENTXP7-201ENST00000475503 772 ntBASIC20.21■□□□□ 0.83
LRCH3Q96II8 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LRCH3Q96II8 AC211476.1-201ENST00000503899 468 ntBASIC20.21■□□□□ 0.83
LRCH3Q96II8 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
LRCH3Q96II8 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC20.21■□□□□ 0.83
LRCH3Q96II8 MIR5100-201ENST00000579544 119 ntBASIC20.21■□□□□ 0.83
LRCH3Q96II8 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC20.21■□□□□ 0.83
LRCH3Q96II8 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC20.21■□□□□ 0.83
LRCH3Q96II8 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
LRCH3Q96II8 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
LRCH3Q96II8 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.21■□□□□ 0.83
LRCH3Q96II8 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.21■□□□□ 0.83
LRCH3Q96II8 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC20.21■□□□□ 0.83
LRCH3Q96II8 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
LRCH3Q96II8 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.83
LRCH3Q96II8 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.83
LRCH3Q96II8 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LRCH3Q96II8 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
LRCH3Q96II8 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LRCH3Q96II8 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
LRCH3Q96II8 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.2■□□□□ 0.82
LRCH3Q96II8 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.2■□□□□ 0.82
LRCH3Q96II8 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
LRCH3Q96II8 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC20.2■□□□□ 0.82
LRCH3Q96II8 SYS1-203ENST00000414310 795 ntTSL 3 BASIC20.2■□□□□ 0.82
LRCH3Q96II8 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC20.2■□□□□ 0.82
LRCH3Q96II8 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC20.2■□□□□ 0.82
LRCH3Q96II8 RN7SL606P-201ENST00000472779 293 ntBASIC20.2■□□□□ 0.82
LRCH3Q96II8 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC20.2■□□□□ 0.82
LRCH3Q96II8 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC20.2■□□□□ 0.82
LRCH3Q96II8 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC20.2■□□□□ 0.82
LRCH3Q96II8 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC20.2■□□□□ 0.82
LRCH3Q96II8 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC20.2■□□□□ 0.82
LRCH3Q96II8 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC20.2■□□□□ 0.82
LRCH3Q96II8 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.2■□□□□ 0.82
LRCH3Q96II8 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC20.2■□□□□ 0.82
LRCH3Q96II8 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.2■□□□□ 0.82
LRCH3Q96II8 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC20.2■□□□□ 0.82
LRCH3Q96II8 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
LRCH3Q96II8 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LRCH3Q96II8 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
LRCH3Q96II8 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LRCH3Q96II8 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
LRCH3Q96II8 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LRCH3Q96II8 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LRCH3Q96II8 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms