Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
SMC1BQ8NDV3 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC22.17■■□□□ 1.14
SMC1BQ8NDV3 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
SMC1BQ8NDV3 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
SMC1BQ8NDV3 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
SMC1BQ8NDV3 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC22.17■■□□□ 1.14
SMC1BQ8NDV3 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC22.17■■□□□ 1.14
SMC1BQ8NDV3 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC22.17■■□□□ 1.14
SMC1BQ8NDV3 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC22.17■■□□□ 1.14
SMC1BQ8NDV3 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
SMC1BQ8NDV3 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
SMC1BQ8NDV3 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
SMC1BQ8NDV3 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC22.17■■□□□ 1.14
SMC1BQ8NDV3 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC22.17■■□□□ 1.14
SMC1BQ8NDV3 AC024563.2-201ENST00000603282 481 ntBASIC22.17■■□□□ 1.14
SMC1BQ8NDV3 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC22.17■■□□□ 1.14
SMC1BQ8NDV3 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
SMC1BQ8NDV3 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC22.17■■□□□ 1.14
SMC1BQ8NDV3 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
SMC1BQ8NDV3 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
SMC1BQ8NDV3 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
SMC1BQ8NDV3 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
SMC1BQ8NDV3 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
SMC1BQ8NDV3 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
SMC1BQ8NDV3 PNMT-202ENST00000394246 821 ntTSL 2 BASIC22.16■■□□□ 1.14
SMC1BQ8NDV3 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC22.16■■□□□ 1.14
SMC1BQ8NDV3 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC22.16■■□□□ 1.14
SMC1BQ8NDV3 COX5A-204ENST00000567270 579 ntTSL 3 BASIC22.16■■□□□ 1.14
SMC1BQ8NDV3 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC22.16■■□□□ 1.14
SMC1BQ8NDV3 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
SMC1BQ8NDV3 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
SMC1BQ8NDV3 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
SMC1BQ8NDV3 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
SMC1BQ8NDV3 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SMC1BQ8NDV3 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
SMC1BQ8NDV3 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC22.15■■□□□ 1.14
SMC1BQ8NDV3 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
SMC1BQ8NDV3 SMG8-203ENST00000578922 2178 ntBASIC22.15■■□□□ 1.14
SMC1BQ8NDV3 TREX1-205ENST00000625293 1783 ntBASIC22.15■■□□□ 1.14
SMC1BQ8NDV3 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SMC1BQ8NDV3 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SMC1BQ8NDV3 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
SMC1BQ8NDV3 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
SMC1BQ8NDV3 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC22.15■■□□□ 1.14
SMC1BQ8NDV3 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC22.15■■□□□ 1.14
SMC1BQ8NDV3 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SMC1BQ8NDV3 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC22.15■■□□□ 1.14
SMC1BQ8NDV3 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
SMC1BQ8NDV3 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
SMC1BQ8NDV3 MYB-221ENST00000527615 2381 ntTSL 5 BASIC22.14■■□□□ 1.14
SMC1BQ8NDV3 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
SMC1BQ8NDV3 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.14
SMC1BQ8NDV3 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
SMC1BQ8NDV3 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
SMC1BQ8NDV3 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.13
SMC1BQ8NDV3 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC22.14■■□□□ 1.13
SMC1BQ8NDV3 RPS2P1-201ENST00000434010 821 ntBASIC22.14■■□□□ 1.13
SMC1BQ8NDV3 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
SMC1BQ8NDV3 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC22.14■■□□□ 1.13
SMC1BQ8NDV3 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC22.14■■□□□ 1.13
SMC1BQ8NDV3 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.13
SMC1BQ8NDV3 AC021087.4-201ENST00000563761 564 ntBASIC22.14■■□□□ 1.13
SMC1BQ8NDV3 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
SMC1BQ8NDV3 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC22.14■■□□□ 1.13
SMC1BQ8NDV3 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.13
SMC1BQ8NDV3 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.13
SMC1BQ8NDV3 HOXB1-202ENST00000577092 1414 ntBASIC22.14■■□□□ 1.13
SMC1BQ8NDV3 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC22.14■■□□□ 1.13
SMC1BQ8NDV3 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC22.13■■□□□ 1.13
SMC1BQ8NDV3 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC22.13■■□□□ 1.13
SMC1BQ8NDV3 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC22.13■■□□□ 1.13
SMC1BQ8NDV3 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
SMC1BQ8NDV3 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SMC1BQ8NDV3 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SMC1BQ8NDV3 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SMC1BQ8NDV3 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SMC1BQ8NDV3 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SMC1BQ8NDV3 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC22.13■■□□□ 1.13
SMC1BQ8NDV3 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SMC1BQ8NDV3 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC22.13■■□□□ 1.13
SMC1BQ8NDV3 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SMC1BQ8NDV3 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC22.13■■□□□ 1.13
SMC1BQ8NDV3 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
SMC1BQ8NDV3 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC22.13■■□□□ 1.13
SMC1BQ8NDV3 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC22.13■■□□□ 1.13
SMC1BQ8NDV3 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
SMC1BQ8NDV3 GOLGA2P11-201ENST00000562660 1621 ntBASIC22.13■■□□□ 1.13
SMC1BQ8NDV3 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
SMC1BQ8NDV3 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SMC1BQ8NDV3 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SMC1BQ8NDV3 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SMC1BQ8NDV3 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
SMC1BQ8NDV3 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC22.12■■□□□ 1.13
SMC1BQ8NDV3 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
SMC1BQ8NDV3 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
SMC1BQ8NDV3 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC22.12■■□□□ 1.13
SMC1BQ8NDV3 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
SMC1BQ8NDV3 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC22.12■■□□□ 1.13
SMC1BQ8NDV3 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
SMC1BQ8NDV3 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC22.12■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms