Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PEX3P56589 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PEX3P56589 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC20.6■□□□□ 0.89
PEX3P56589 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PEX3P56589 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PEX3P56589 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PEX3P56589 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PEX3P56589 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC20.6■□□□□ 0.89
PEX3P56589 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PEX3P56589 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC20.6■□□□□ 0.89
PEX3P56589 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC20.6■□□□□ 0.89
PEX3P56589 NEK4P2-201ENST00000580004 1012 ntBASIC20.6■□□□□ 0.89
PEX3P56589 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PEX3P56589 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC20.6■□□□□ 0.89
PEX3P56589 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PEX3P56589 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC20.6■□□□□ 0.89
PEX3P56589 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PEX3P56589 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC20.6■□□□□ 0.89
PEX3P56589 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
PEX3P56589 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PEX3P56589 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC20.6■□□□□ 0.89
PEX3P56589 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
PEX3P56589 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PEX3P56589 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC20.6■□□□□ 0.89
PEX3P56589 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
PEX3P56589 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
PEX3P56589 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PEX3P56589 Z98044.1-201ENST00000632503 1764 ntBASIC20.59■□□□□ 0.89
PEX3P56589 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC20.59■□□□□ 0.89
PEX3P56589 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
PEX3P56589 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PEX3P56589 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PEX3P56589 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC20.59■□□□□ 0.89
PEX3P56589 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PEX3P56589 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PEX3P56589 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PEX3P56589 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
PEX3P56589 GAD2-202ENST00000376248 680 ntTSL 5 BASIC20.59■□□□□ 0.89
PEX3P56589 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC20.59■□□□□ 0.89
PEX3P56589 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC20.59■□□□□ 0.89
PEX3P56589 YBX1P2-201ENST00000489612 999 ntBASIC20.59■□□□□ 0.89
PEX3P56589 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC20.59■□□□□ 0.89
PEX3P56589 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
PEX3P56589 AC140113.3-201ENST00000605663 199 ntBASIC20.59■□□□□ 0.89
PEX3P56589 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC20.59■□□□□ 0.89
PEX3P56589 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC20.59■□□□□ 0.89
PEX3P56589 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PEX3P56589 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PEX3P56589 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC20.59■□□□□ 0.89
PEX3P56589 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PEX3P56589 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC20.59■□□□□ 0.89
PEX3P56589 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
PEX3P56589 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
PEX3P56589 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PEX3P56589 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PEX3P56589 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PEX3P56589 COBL-210ENST00000632460 1941 ntTSL 5 BASIC20.59■□□□□ 0.89
PEX3P56589 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PEX3P56589 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC20.58■□□□□ 0.89
PEX3P56589 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.89
PEX3P56589 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
PEX3P56589 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
PEX3P56589 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PEX3P56589 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
PEX3P56589 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PEX3P56589 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PEX3P56589 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC20.58■□□□□ 0.89
PEX3P56589 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PEX3P56589 ANKRD20A18P-201ENST00000359341 492 ntBASIC20.58■□□□□ 0.89
PEX3P56589 AK4P3-201ENST00000418260 669 ntBASIC20.58■□□□□ 0.89
PEX3P56589 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC20.58■□□□□ 0.89
PEX3P56589 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PEX3P56589 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PEX3P56589 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC20.58■□□□□ 0.89
PEX3P56589 AC011558.1-201ENST00000623459 338 ntBASIC20.58■□□□□ 0.89
PEX3P56589 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC20.58■□□□□ 0.88
PEX3P56589 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC20.58■□□□□ 0.88
PEX3P56589 CROCCP3-202ENST00000420820 1947 ntBASIC20.58■□□□□ 0.88
PEX3P56589 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC20.58■□□□□ 0.88
PEX3P56589 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
PEX3P56589 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
PEX3P56589 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
PEX3P56589 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC20.58■□□□□ 0.88
PEX3P56589 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PEX3P56589 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
PEX3P56589 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PEX3P56589 AC034236.2-201ENST00000606662 1610 ntBASIC20.57■□□□□ 0.88
PEX3P56589 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PEX3P56589 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PEX3P56589 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PEX3P56589 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
PEX3P56589 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PEX3P56589 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PEX3P56589 AP000523.1-201ENST00000398242 1049 ntBASIC20.57■□□□□ 0.88
PEX3P56589 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC20.57■□□□□ 0.88
PEX3P56589 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PEX3P56589 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC20.57■□□□□ 0.88
PEX3P56589 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC20.57■□□□□ 0.88
PEX3P56589 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC20.57■□□□□ 0.88
PEX3P56589 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 159.5 ms